Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00579 | ATGGAGATTCCGAAACTATCATTTTCACTTCACAAAGCTGAAAACCAACTTTCCACAAGAGCAGGCATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCACAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATTGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA | 567 | 40.92 | MEIPKLSFSLHKAENQLSTRAGMRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6550126 | 6551208 | + | ClCG11G006030.2 | Cla11g00579 | 284401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00579 | 188 | Pfam | Lateral organ boundaries (LOB) domain | 34 | 131 | IPR004883 | - | |
Cla11g00579 | 188 | ProSiteProfiles | LOB domain profile. | 33 | 134 | IPR004883 | - | |
Cla11g00579 | 188 | Coils | Coil | 113 | 140 | - | - | |
Cla11g00579 | 188 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 23 | 151 | - | - | |
Cla11g00579 | 188 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 21 | 23 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla11g00579 | Cla-Chr11:6550126 | Cla11g01084 | Cla-Chr11:21962719 | 4.51E-50 | dispersed | |
Cla11g00579 | Cla-Chr11:6550126 | Cla10g01326 | Cla-Chr10:28218498 | 2.22E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62019 | PF03195 | LOB | 1.70E-38 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00579 | - | - | csv:101222226 | 288.115 |