Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00579 ATGGAGATTCCGAAACTATCATTTTCACTTCACAAAGCTGAAAACCAACTTTCCACAAGAGCAGGCATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCACAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATTGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA 567 40.92 MEIPKLSFSLHKAENQLSTRAGMRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6550126 6551208 + ClCG11G006030.2 Cla11g00579 284401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00579 188 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Cla11g00579 188 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Cla11g00579 188 Coils Coil 113 140 - -
Cla11g00579 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 151 - -
Cla11g00579 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 23 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00579 Cla-Chr11:6550126 Cla11g01084 Cla-Chr11:21962719 4.51E-50 dispersed
Cla11g00579 Cla-Chr11:6550126 Cla10g01326 Cla-Chr10:28218498 2.22E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62019 PF03195 LOB 1.70E-38 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00579 - - csv:101222226 288.115