Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00594 ATGGCATTGGTATTTGATTTCATGGTTAATGGGAACCTAGAGAAGTGGTTGCATCCAGTTGATAATTTGAACCAGGAAGAGGAGCAAAGGTATTTAAATATTATGCAAAGACTAAATATTGCCATTGACGTGGCTAGTGCTCTAGATTATCTGCATAATGGTAGCCACATACCAATAGCTCACTGTGACTTAAAGCCAAGCAATGTTCTTTTGGATGCTAACATGACTGCTCATGTTGGAGATTTTGGATTGGCAAAATATATGGTTGGAACTTCCTTCCAGAACAAATCAACTGAAAGTGGATCCATCAGCATACGAGGCACGATTGGATATGCTCCTCCAGAGTATGCCATGGGAAGTAAGGTTTCGACGCATGGTGATGTGTATAGTTATGGCATCTTATTGTTGGAGATGTTCACTGGAAAGAGTCCAACTGATAATATGTTCAAAGATGGCTTAACCTTGAACAACTACGTTCTTACAGCCTTACCTGAAAGGGTACAAGAAATAGCAGACCCAACAATGGGCCTTCAAGCACTGAATGGAATAAGCAACAATAATAACATGCTTAACAACAACCATGTTCTTGAGGCTTTACCCGATCAGTTAGAACAAATGGGAGATCCAAAATTGAGCCTTCAAGAACGGGAGGGAACAGGAAACCAAAATCTTATGGTTCAGGCTAATCAATCTCTCAGAATTAAAGAGTGCTTGTTTTCAATTTTCAGCATAGGAGTTGTATGTTCTGCCCAAATGCCTAGTGAGAGAATGAATATCAGTGATGTTGTTTCCCAACTATGCCTTACAAGAGAAAAATTTTCATAG 825 39.52 MALVFDFMVNGNLEKWLHPVDNLNQEEEQRYLNIMQRLNIAIDVASALDYLHNGSHIPIAHCDLKPSNVLLDANMTAHVGDFGLAKYMVGTSFQNKSTESGSISIRGTIGYAPPEYAMGSKVSTHGDVYSYGILLLEMFTGKSPTDNMFKDGLTLNNYVLTALPERVQEIADPTMGLQALNGISNNNNMLNNNHVLEALPDQLEQMGDPKLSLQEREGTGNQNLMVQANQSLRIKECLFSIFSIGVVCSAQMPSERMNISDVVSQLCLTREKFS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6737886 6738937 - ClCG11G006190.2 Cla11g00594 284416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00594 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Cla11g00594 274 SMART serkin_6 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00594 274 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 175 - -
Cla11g00594 274 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 192 273 - -
Cla11g00594 274 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 175 - -
Cla11g00594 274 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 192 273 - -
Cla11g00594 274 Gene3D Transferase(Phosphotransferase) domain 1 8 273 - -
Cla11g00594 274 Pfam Protein kinase domain 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00594 274 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g00594 274 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00594 Cla-Chr11:6737886 Cla11g00596 Cla-Chr11:6758921 5.36E-120 dispersed
Cla11g00594 Cla-Chr11:6737886 Cla11g00595 Cla-Chr11:6739030 6.61E-164 tandem
Cla10g02083 Cla-Chr10:36519277 Cla11g00594 Cla-Chr11:6737886 1.37E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80931 PF00069 Pkinase 2.30E-25 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00594 - - bhj:120075319 473.011