Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00604 ATGGCAACGACCGAGAACACAGTTTTGCAATTTTCACAGTCTTCCAACACTTTATCTGCGAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCTGATCGAGTAATTGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGTAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACATGAATTTTATTCAAGAGAAGTTGGAAACCCTATCCACCTGACTGTTGATACTGGATTTAAAAATGGTGAAGGGACGATTAAAGCTTATATCTCTGTCAATTTGTCCCTGGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACGTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCGTCAATGGAGAGATTGCTTGCCTTAATTGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGACACGTTGAGGCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTTGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCCGGACACAACTGAGTTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 42.31 MATTENTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVGNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6870656 6874115 + ClCG11G006300.1 Cla11g00604 284426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00604 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cla11g00604 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
Cla11g00604 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cla11g00604 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla11g00604 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cla11g00604 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla11g00604 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cla11g00604 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cla11g00604 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02120 Cla-Chr9:38795455 Cla11g00604 Cla-Chr11:6870656 3.34E-11 dispersed
Cla10g02075 Cla-Chr10:36435244 Cla11g00604 Cla-Chr11:6870656 2.91E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00604 K03249 - csv:101205957 556.599