Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00604 | ATGGCAACGACCGAGAACACAGTTTTGCAATTTTCACAGTCTTCCAACACTTTATCTGCGAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCTGATCGAGTAATTGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGTAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACATGAATTTTATTCAAGAGAAGTTGGAAACCCTATCCACCTGACTGTTGATACTGGATTTAAAAATGGTGAAGGGACGATTAAAGCTTATATCTCTGTCAATTTGTCCCTGGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACGTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCGTCAATGGAGAGATTGCTTGCCTTAATTGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGACACGTTGAGGCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTTGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCCGGACACAACTGAGTTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA | 858 | 42.31 | MATTENTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVGNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6870656 | 6874115 | + | ClCG11G006300.1 | Cla11g00604 | 284426 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00604 | 285 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 18 | 120 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cla11g00604 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 17 | 284 | - | - | |
Cla11g00604 | 285 | Pfam | Maintenance of mitochondrial structure and function | 172 | 278 | IPR024969 | - | |
Cla11g00604 | 285 | CDD | MPN_eIF3f | 21 | 278 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cla11g00604 | 285 | SMART | pad1_6 | 19 | 150 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cla11g00604 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F | 17 | 284 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cla11g00604 | 285 | Gene3D | Cytidine Deaminase, domain 2 | 7 | 186 | - | - | |
Cla11g00604 | 285 | ProSiteProfiles | MPN domain profile. | 20 | 151 | IPR037518 | - | |
Cla11g00604 | 285 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 18 | 281 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g02120 | Cla-Chr9:38795455 | Cla11g00604 | Cla-Chr11:6870656 | 3.34E-11 | dispersed | |
Cla10g02075 | Cla-Chr10:36435244 | Cla11g00604 | Cla-Chr11:6870656 | 2.91E-23 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00604 | K03249 | - | csv:101205957 | 556.599 |