Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00617 | ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTTGCCTTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 660 | 50.15 | MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADLTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 219 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7083177 | 7086449 | + | ClCG11G006440.1 | Cla11g00617 | 284439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00617 | 219 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Cla11g00617 | 219 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270 | |
| Cla11g00617 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 152 | IPR013083 | - | |
| Cla11g00617 | 219 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270 | |
| Cla11g00617 | 219 | SUPERFAMILY | RING/U-box | 89 | 146 | - | - | |
| Cla11g00617 | 219 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 5 | 219 | - | - | |
| Cla11g00617 | 219 | PANTHER | ZINC FINGER, RING-CH-TYPE | 5 | 219 | - | - | |
| Cla11g00617 | 219 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00249 | Cla-Chr7:2744188 | Cla11g00617 | Cla-Chr11:7083177 | 2.62E-23 | dispersed | |
| Cla11g00617 | Cla-Chr11:7083177 | Cla11g01629 | Cla-Chr11:29983374 | 9.89E-11 | dispersed | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla11g00617 | Cla-Chr11:7083177 | 3.72E-62 | wgd | |
| Cla11g00617 | Cla-Chr11:7083177 | Cla03g00103 | Cla-Chr3:1069243 | 2.56E-48 | wgd | |
| Cla11g00617 | Cla-Chr11:7083177 | Cla04g00736 | Cla-Chr4:22386705 | 1.27E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00617 | - | - | csv:101207404 | 352.443 |