Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00617 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTTGCCTTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 660 50.15 MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADLTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 219
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 7083177 7086449 + ClCG11G006440.1 Cla11g00617 284439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00617 219 MobiDBLite consensus disorder prediction 1 40 - -
Cla11g00617 219 SMART ringv_2 91 144 IPR011016 GO:0008270
Cla11g00617 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Cla11g00617 219 Pfam RING-variant domain 92 143 IPR011016 GO:0008270
Cla11g00617 219 SUPERFAMILY RING/U-box 89 146 - -
Cla11g00617 219 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 219 - -
Cla11g00617 219 PANTHER ZINC FINGER, RING-CH-TYPE 5 219 - -
Cla11g00617 219 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00249 Cla-Chr7:2744188 Cla11g00617 Cla-Chr11:7083177 2.62E-23 dispersed
Cla11g00617 Cla-Chr11:7083177 Cla11g01629 Cla-Chr11:29983374 9.89E-11 dispersed
Cla10g02055 Cla-Chr10:36277836 Cla11g00617 Cla-Chr11:7083177 3.72E-62 wgd
Cla11g00617 Cla-Chr11:7083177 Cla03g00103 Cla-Chr3:1069243 2.56E-48 wgd
Cla11g00617 Cla-Chr11:7083177 Cla04g00736 Cla-Chr4:22386705 1.27E-53 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00617 - - csv:101207404 352.443