Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00643 ATGGTGGTTGCTGAAGGTGGTAGCCGAAGTTGGCCAACGGCGATCGTCGAAGGTGGTTCTGAATGTTGGCCGGATATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCATCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCTCCTTGACCGTGTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA 822 50.61 MVVAEGGSRSWPTAIVEGGSECWPDMADRCWGGIGNLAHTEQEHGTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHGATSLTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTTSLPVYNLIPNTQISQEMFWAPLPLPPPSY 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7363514 7365433 + ClCG11G006720.2 Cla11g00643 284465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00643 273 Coils Coil 204 224 - -
Cla11g00643 273 Gene3D - 86 215 - -
Cla11g00643 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 273 IPR014476 GO:0003680
Cla11g00643 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 273 - -
Cla11g00643 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 208 - -
Cla11g00643 273 ProSiteProfiles PPC domain profile profile. 82 217 IPR005175 -
Cla11g00643 273 MobiDBLite consensus disorder prediction 42 59 - -
Cla11g00643 273 MobiDBLite consensus disorder prediction 38 78 - -
Cla11g00643 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 196 IPR005175 -
Cla11g00643 273 CDD DUF296 86 194 IPR005175 -
Cla11g00643 273 MobiDBLite consensus disorder prediction 206 234 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00325 Cla11g00643 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01139 Cla-Chr9:12782911 Cla11g00643 Cla-Chr11:7363514 2.36E-63 dispersed
Cla11g00643 Cla-Chr11:7363514 Cla01g00339 Cla-Chr1:3653470 3.00E-49 dispersed
Cla11g01421 Cla-Chr11:27769884 Cla11g00643 Cla-Chr11:7363514 2.37E-42 dispersed
Cla11g00643 Cla-Chr11:7363514 Cla07g00325 Cla-Chr7:3777463 7.14E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00643 - - cmos:111444826 332.798