Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00648 ATGGTTTTGCCTCTCAAAACACAGACTGGTTTGATTTCTCAGCCTTCCAACAAGCTCAGTTTCCACCATAATGTCACTTTGACTGTTTCTTTAACTGTTGGCTCACCTCCTCAACAAGTCACCATGGTTCTCGATACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAATCCCCAAATTTGACCTCTGTTTTTAACCCACTTTCCTCCTCTTCTTACTCCCCAATCCCCTGTGCTTCCCCCATTTGCCGGACCCGAACCCGAGATTTACCCAACCCGGTTACCTGCGACCCGAAAAAGCTCTGCCACGCCATTGTCTCTTACGCCGATGCATCGTCGCTGGAGGGCAACCTCGCATCGGATACGTACCGAATCGGGTCATCGGCTCAACCCGGAACTTTATTCGGGTGTATGGATTCGGGTTTCAGTTCGAATTCGGAGGAAGACGCCAAGACTACTGGATTGATGGGGATGAACAGAGGATCGCTCTCGTTTGTGATCCAATTGGGTTTGCCGAGATTCTCTTATTGCATATCGGGTCGTGATTCTTCTGGGGTTCTTCTTTTCGGTGATGCGCCTCTTTCATGGCTTGGGAATTTAACCTACACGCCTTTAGTTCAAATGTCAACCCCATTGCCGTATTACGACCGAGTTGCGTACACCGTCCAACTCGACGGAATCAGAGTAGGGGACAAAATTCTACCACTCCCGAAATCAATCTTCGCACCGGACCACACCGGCGCCGGGCAAACCATGGTGGATTCAGGAACCCAGTTCACGTTTCTTCTCGGACCAGTGTACACAGCTTTAAAGAACGAGTTTCTGTTGCAAACGAAAGGGGTTTTAGTCCCACTGGGTGATCCAAACTTCGTGTTTCAAGGAGCGATGGATTTATGCTACAGAGTACCAGCGAAAGAGGGAAAACTACCGCCGTTGCCGGCGGTGAGTCTGATGTTCCGTGGGGCGGAGATGGTGGTTGGAGGGGAGGTGCTGTTGTACAGAGTACCGGGAATGATGAAAGGAAAGGAGTGGGTTTATTGCTTGACGTTTGGGAATTCGGATTTGTTAGGAATAGAAGCGTTTGTGATAGGGCATCATCATCAACAAAACGTGTGGATGGAATTTGATTTGGTGAAATCAAGGGTGGGATTTGTAGAGACGAGAGGAAAAAACTACGTCGTTCTGATCATTCAACTCCTTTTACCCAAAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCACAGCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAAACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTGTAAGTCTCGGTTTTCCTTTGTCATGGATCATTCTGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA 2304 47.22 MVLPLKTQTGLISQPSNKLSFHHNVTLTVSLTVGSPPQQVTMVLDTGSELSWLHCKKSPNLTSVFNPLSSSSYSPIPCASPICRTRTRDLPNPVTCDPKKLCHAIVSYADASSLEGNLASDTYRIGSSAQPGTLFGCMDSGFSSNSEEDAKTTGLMGMNRGSLSFVIQLGLPRFSYCISGRDSSGVLLFGDAPLSWLGNLTYTPLVQMSTPLPYYDRVAYTVQLDGIRVGDKILPLPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLLQTKGVLVPLGDPNFVFQGAMDLCYRVPAKEGKLPPLPAVSLMFRGAEMVVGGEVLLYRVPGMMKGKEWVYCLTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFVETRGKNYVVLIIQLLLPKACLTRKRNERRVRQQLNASESLPHSTRSLIFSVATPQPGFSFSHNFKRPHHQNFSIQSKPCRFWSYTINPIYSILFCKSRFSFVMDHSDMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7437830 7450692 + ClCG11G006770.2 Cla11g00648 284470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00648 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 751 IPR013083 -
Cla11g00648 767 ProSiteProfiles Zinc finger RING-type profile. 706 747 IPR001841 -
Cla11g00648 767 MobiDBLite consensus disorder prediction 668 697 - -
Cla11g00648 767 CDD RING-H2_PA-TM-RING 705 747 - -
Cla11g00648 767 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 42 53 IPR001969 GO:0004190|GO:0006508
Cla11g00648 767 Gene3D Acid Proteases 196 392 IPR021109 -
Cla11g00648 767 Gene3D Acid Proteases 20 190 IPR021109 -
Cla11g00648 767 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 388 - -
Cla11g00648 767 SUPERFAMILY RING/U-box 700 753 - -
Cla11g00648 767 PANTHER ASPARTYL PROTEASE-RELATED 3 388 IPR001461 GO:0004190|GO:0006508
Cla11g00648 767 ProSiteProfiles Peptidase family A1 domain profile. 27 385 IPR033121 -
Cla11g00648 767 SMART ring_2 706 746 IPR001841 -
Cla11g00648 767 Pfam Xylanase inhibitor N-terminal 29 191 IPR032861 -
Cla11g00648 767 CDD pepsin_A_like_plant 26 387 IPR034161 -
Cla11g00648 767 MobiDBLite consensus disorder prediction 663 697 - -
Cla11g00648 767 Pfam Xylanase inhibitor C-terminal 219 385 IPR032799 -
Cla11g00648 767 SUPERFAMILY Acid proteases 28 388 IPR021109 -
Cla11g00648 767 Pfam Ring finger domain 705 747 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00648 - - - csv:105435736 731.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla07g00320 Cla11g00648 CCT
Cla07g00320 Cla11g00648 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01134 Cla-Chr5:12011455 Cla11g00648 Cla-Chr11:7437830 6.41E-67 dispersed
Cla06g00548 Cla-Chr6:6660753 Cla11g00648 Cla-Chr11:7437830 7.42E-11 dispersed
Cla09g00638 Cla-Chr9:6038383 Cla11g00648 Cla-Chr11:7437830 2.90E-15 dispersed
Cla11g00648 Cla-Chr11:7437830 Cla04g00123 Cla-Chr4:3551574 6.12E-41 dispersed
Cla04g00610 Cla-Chr4:20284498 Cla11g00648 Cla-Chr11:7437830 2.05E-11 transposed
Cla04g00920 Cla-Chr4:24165553 Cla11g00648 Cla-Chr11:7437830 1.95E-06 transposed
Cla07g00241 Cla-Chr7:2675694 Cla11g00648 Cla-Chr11:7437830 6.58E-13 transposed
Cla10g02018 Cla-Chr10:35985653 Cla11g00648 Cla-Chr11:7437830 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g323 Blo04g00117 . . . . . Bma03g00286 . Cmo04g00206 Cmo04g01246 Cma04g01175 Cma04g00205 Car04g01080 . Sed11g2216 Cpe13g01105 Cpe01g00173 Bhi04g02385 Tan11g0202 Cmetu03g1641 . Hepe02g3365 . Lcy10g2247 Cla07g00320 Cam07g0340 Cec07g0382 Cco07g0343 Clacu07g0333 Cmu07g0386 Cre07g0697 . . Cone11ag1141 . Lsi03g00366 Csa06g00127 Chy10g00531 Cme10g00909 . Blo04g00269 . . Bpe04g01831 . . Bma08g01006 . Cmo04g03071 Cmo15g00107 Cma04g02946 Cma15g00100 Car04g02836 Car15g00108 Cpe01g01084 Cpe01g02555 . . . . . . . Cla11g00648 Cam11g0705 Cec11g0702 Cco11g0691 Clacu11g0827 Cmu11g0682 Cre11g1155 Lsi04g00895 Csa05g00723 Chy03g00135 Cme03g00168
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla11g00466 . 333 551 C3H Transcription Factor Family AT3G02290 62.6 5.4e-73 271.2
Cla06g01069 . 34 338 C3H Transcription Factor Family AT1G11020 75.3 5.3e-135 477.6
Cla07g01390 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.1e-68 255.0
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 6.4e-121 431.0
Cla10g00873 . 77 501 C3H Transcription Factor Family AT3G16090 71.8 6.8e-166 580.9
Cla11g00466 . 329 551 C3H Transcription Factor Family AT5G38895 56.3 3.7e-70 262.3
Cla08g01518 . 23 234 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cla01g01589 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Cla01g01866 . 100 387 C3H Transcription Factor Family AT2G22120 70.7 3.2e-128 455.3
Cla08g01070 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.2e-40 161.8
Cla06g01484 . 30 426 C3H Transcription Factor Family AT1G18470 68.0 2.6e-158 555.4
Cla01g00581 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 5.0e-50 195.3
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla09g02094 . 114 346 C3H Transcription Factor Family AT5G55970 67.8 5.0e-93 338.2
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 8.2e-116 414.1
Cla10g01676 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 1.0e-104 377.5
Cla09g02094 . 116 415 C3H Transcription Factor Family AT4G26580 62.3 5.2e-109 391.3
Cla07g00504 . 1 503 C3H Transcription Factor Family AT5G01960 53.0 3.5e-134 475.3
Cla02g01065 . 51 205 C3H Transcription Factor Family AT2G04240 59.3 8.3e-44 173.7
Cla02g02217 . 71 315 C3H Transcription Factor Family AT5G19430 53.3 3.0e-64 242.3
Cla07g01061 . 188 606 C3H Transcription Factor Family AT5G45290 55.4 2.6e-105 379.8
Cla02g02217 . 110 315 C3H Transcription Factor Family AT5G12310 56.4 2.9e-59 225.7
Cla06g01384 . 413 705 C3H Transcription Factor Family AT5G05810 52.8 3.9e-74 275.8
Cla11g00617 . 53 219 C3H Transcription Factor Family AT5G05830 65.3 2.0e-58 222.6
Cla10g02055 CCT,ECH 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.2e-45 178.7
Cla04g00736 CCT,ECH 38 168 C3H Transcription Factor Family AT5G05830 61.8 3.1e-40 162.2
Cla11g00466 . 333 551 C3H Transcription Factor Family AT5G15790 59.6 3.0e-71 265.4
Cla11g00648 CCT,ECH 493 764 C3H Transcription Factor Family AT3G55530 80.2 5.2e-115 411.0
Cla09g00626 . 85 357 C3H Transcription Factor Family AT1G63900 75.5 9.6e-117 416.8
Cla05g00288 . 61 443 C3H Transcription Factor Family AT2G44580 53.7 3.4e-120 428.7
Cla08g01518 . 32 157 C3H Transcription Factor Family AT1G74990 59.8 9.5e-41 163.3
Cla05g01648 . 142 422 C3H Transcription Factor Family AT5G20910 61.8 3.0e-95 345.5
Cla10g00873 . 195 487 C3H Transcription Factor Family AT1G65040 68.8 2.0e-105 379.4
Cla01g01589 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.1e-73 273.5
Cla08g01518 . 13 236 C3H Transcription Factor Family AT2G23780 57.0 7.2e-70 260.8
Cla10g01555 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cla01g00245 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cla05g00192 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cla01g00642 CCT 18 307 C3H Transcription Factor Family AT1G68070 60.2 3.4e-87 318.9
Cla11g01841 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.0e-45 177.9
Cla08g01288 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cla10g00012 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.4e-39 157.9
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla01g01481 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.1e-54 210.3
Cla10g01731 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.2e-41 164.9
Cla04g00105 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 5.0e-151 530.8
Cla05g00970 . 666 923 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cla05g00969 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 1.0e-127 453.4
Cla02g02306 . 174 470 C3H Transcription Factor Family AT2G41980 71.8 3.9e-127 451.4
Cla01g00756 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 4.7e-125 444.5
Cla06g00118 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.9e-123 436.8
Cla05g02675 . 48 259 C3H Transcription Factor Family AT2G41980 68.5 3.5e-96 348.6
Cla05g00579 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.7e-95 345.9
Cla06g01657 CCT 43 333 C3H Transcription Factor Family AT3G47990 63.9 2.9e-111 398.7
Cla01g01293 CCT 348 613 C3H Transcription Factor Family AT3G47990 57.7 1.0e-87 320.5
Cla11g01841 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.5e-52 201.4
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cla09g01740 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.2e-84 309.3
Cla10g00050 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.3e-75 278.5
Cla10g01969 . 680 950 C3H Transcription Factor Family AT5G02750 53.4 6.4e-68 254.6
Cla06g01484 . 34 504 C3H Transcription Factor Family AT1G73950 66.2 2.4e-178 622.1
Cla08g00174 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.6e-39 157.9
Cla01g00642 CCT 15 256 C3H Transcription Factor Family AT2G01735 59.6 3.9e-72 268.5
Cla10g00333 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001758 3 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 3 2 2 2 3 2 2 2 2 2 4 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00648 Cla_Chr11 FPKM 11.235556 15.826667 8.779782 8.46403 5.372451 2.628908 4.71538 17.461493 17.71397 18.672972