Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00648 ATGGTTTTGCCTCTCAAAACACAGACTGGTTTGATTTCTCAGCCTTCCAACAAGCTCAGTTTCCACCATAATGTCACTTTGACTGTTTCTTTAACTGTTGGCTCACCTCCTCAACAAGTCACCATGGTTCTCGATACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAATCCCCAAATTTGACCTCTGTTTTTAACCCACTTTCCTCCTCTTCTTACTCCCCAATCCCCTGTGCTTCCCCCATTTGCCGGACCCGAACCCGAGATTTACCCAACCCGGTTACCTGCGACCCGAAAAAGCTCTGCCACGCCATTGTCTCTTACGCCGATGCATCGTCGCTGGAGGGCAACCTCGCATCGGATACGTACCGAATCGGGTCATCGGCTCAACCCGGAACTTTATTCGGGTGTATGGATTCGGGTTTCAGTTCGAATTCGGAGGAAGACGCCAAGACTACTGGATTGATGGGGATGAACAGAGGATCGCTCTCGTTTGTGATCCAATTGGGTTTGCCGAGATTCTCTTATTGCATATCGGGTCGTGATTCTTCTGGGGTTCTTCTTTTCGGTGATGCGCCTCTTTCATGGCTTGGGAATTTAACCTACACGCCTTTAGTTCAAATGTCAACCCCATTGCCGTATTACGACCGAGTTGCGTACACCGTCCAACTCGACGGAATCAGAGTAGGGGACAAAATTCTACCACTCCCGAAATCAATCTTCGCACCGGACCACACCGGCGCCGGGCAAACCATGGTGGATTCAGGAACCCAGTTCACGTTTCTTCTCGGACCAGTGTACACAGCTTTAAAGAACGAGTTTCTGTTGCAAACGAAAGGGGTTTTAGTCCCACTGGGTGATCCAAACTTCGTGTTTCAAGGAGCGATGGATTTATGCTACAGAGTACCAGCGAAAGAGGGAAAACTACCGCCGTTGCCGGCGGTGAGTCTGATGTTCCGTGGGGCGGAGATGGTGGTTGGAGGGGAGGTGCTGTTGTACAGAGTACCGGGAATGATGAAAGGAAAGGAGTGGGTTTATTGCTTGACGTTTGGGAATTCGGATTTGTTAGGAATAGAAGCGTTTGTGATAGGGCATCATCATCAACAAAACGTGTGGATGGAATTTGATTTGGTGAAATCAAGGGTGGGATTTGTAGAGACGAGAGGAAAAAACTACGTCGTTCTGATCATTCAACTCCTTTTACCCAAAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCACAGCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAAACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTGTAAGTCTCGGTTTTCCTTTGTCATGGATCATTCTGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA 2304 47.22 MVLPLKTQTGLISQPSNKLSFHHNVTLTVSLTVGSPPQQVTMVLDTGSELSWLHCKKSPNLTSVFNPLSSSSYSPIPCASPICRTRTRDLPNPVTCDPKKLCHAIVSYADASSLEGNLASDTYRIGSSAQPGTLFGCMDSGFSSNSEEDAKTTGLMGMNRGSLSFVIQLGLPRFSYCISGRDSSGVLLFGDAPLSWLGNLTYTPLVQMSTPLPYYDRVAYTVQLDGIRVGDKILPLPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLLQTKGVLVPLGDPNFVFQGAMDLCYRVPAKEGKLPPLPAVSLMFRGAEMVVGGEVLLYRVPGMMKGKEWVYCLTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFVETRGKNYVVLIIQLLLPKACLTRKRNERRVRQQLNASESLPHSTRSLIFSVATPQPGFSFSHNFKRPHHQNFSIQSKPCRFWSYTINPIYSILFCKSRFSFVMDHSDMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7437830 7450692 + ClCG11G006770.2 Cla11g00648 284470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00648 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 751 IPR013083 -
Cla11g00648 767 ProSiteProfiles Zinc finger RING-type profile. 706 747 IPR001841 -
Cla11g00648 767 MobiDBLite consensus disorder prediction 668 697 - -
Cla11g00648 767 CDD RING-H2_PA-TM-RING 705 747 - -
Cla11g00648 767 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 42 53 IPR001969 GO:0004190|GO:0006508
Cla11g00648 767 Gene3D Acid Proteases 196 392 IPR021109 -
Cla11g00648 767 Gene3D Acid Proteases 20 190 IPR021109 -
Cla11g00648 767 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 388 - -
Cla11g00648 767 SUPERFAMILY RING/U-box 700 753 - -
Cla11g00648 767 PANTHER ASPARTYL PROTEASE-RELATED 3 388 IPR001461 GO:0004190|GO:0006508
Cla11g00648 767 ProSiteProfiles Peptidase family A1 domain profile. 27 385 IPR033121 -
Cla11g00648 767 SMART ring_2 706 746 IPR001841 -
Cla11g00648 767 Pfam Xylanase inhibitor N-terminal 29 191 IPR032861 -
Cla11g00648 767 CDD pepsin_A_like_plant 26 387 IPR034161 -
Cla11g00648 767 MobiDBLite consensus disorder prediction 663 697 - -
Cla11g00648 767 Pfam Xylanase inhibitor C-terminal 219 385 IPR032799 -
Cla11g00648 767 SUPERFAMILY Acid proteases 28 388 IPR021109 -
Cla11g00648 767 Pfam Ring finger domain 705 747 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00320 Cla11g00648 CCT
Cla07g00320 Cla11g00648 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01134 Cla-Chr5:12011455 Cla11g00648 Cla-Chr11:7437830 6.41E-67 dispersed
Cla06g00548 Cla-Chr6:6660753 Cla11g00648 Cla-Chr11:7437830 7.42E-11 dispersed
Cla09g00638 Cla-Chr9:6038383 Cla11g00648 Cla-Chr11:7437830 2.90E-15 dispersed
Cla11g00648 Cla-Chr11:7437830 Cla04g00123 Cla-Chr4:3551574 6.12E-41 dispersed
Cla04g00610 Cla-Chr4:20284498 Cla11g00648 Cla-Chr11:7437830 2.05E-11 transposed
Cla04g00920 Cla-Chr4:24165553 Cla11g00648 Cla-Chr11:7437830 1.95E-06 transposed
Cla07g00241 Cla-Chr7:2675694 Cla11g00648 Cla-Chr11:7437830 6.58E-13 transposed
Cla10g02018 Cla-Chr10:35985653 Cla11g00648 Cla-Chr11:7437830 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00648 - - csv:105435736 731.48