Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00675 ATGGAAAATTTGAAACAAACCAAGCAAATTGAGTCCTGGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTACACTGCACCAATGGAGGAAAATTCAAGCCTTGTCACAGAATCAACTCTCACAAACTCCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCATGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCGTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTTTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTACCTCAATGGAATAGACACTCCTAATATGTTTGGTGCCACAACATTGATCGTTAAGATTATTGGGAGCATTGGAGCAGTGGCTGCTGGGCTAGATCTTGGGAAAGAGGGGCCTCTAGTACACATTGGCAGCTGCATTGCTTCTTTACTTGGACAGGGCGGTCCAGATAATTACCGAGTCAAATGGACATGGCTGCGCTATTTCAACAACGATCGTGATCGTCGGGATCTTATCACATGTGGGGCATCATCAGGCGTTTGTGCAGCTTTCCGAGCTCCAGTCGGGGGTGTCCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTCTTCAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATCATGTTTGATGTCAGTGGTGTTTCTGTTAGTTACCATATCATGGACATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTCCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAAGGAAGAATGCACAAACTAATACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGTCCAATGCACCCCCTGCAACCCTTCTCTTCCAGCTTCCGCTTGCCCTACCAATGGCCGCTCCGGCAATTTCAAGCAGTTCAACTGTCCTAAAGGCCATTACAACGACCTCGCTACTCTTCTTCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAATACTTCCGCCGAGTATCAGCCTCTCTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTGTTAGGGTTAATCACCTTCGGTATCGCCGTCCCCTCCGGTCTCTTCCTTCCAATCATCTTAATGGGCTCTGGCTATGGCCGCCTCATCGGCCTCCTCATGCGACCTTACACCAATCTCGATCAAGGACTCTTGGCTGTTCTTGGTGCTGCCTCCTTAATGGCCGGCTCCATGCGGATGACCGTTTCCCTCTGTGTCATATTCCTCGAACTCACCAACAATCTCCTTCTACTTCCGATTACCATGATTGTTCTTCTGATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGCATTTACGACATCATTCTGCATCTGAAGGGGCTTCCATTCCTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTGGGCGAGCTGGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGATTAGAGAAAGTATCCCGCATTGTGGAGGTTCTTAGGAACACGACGCACAATGGATTCCCTGTTGTGGACGCCGATGCGGTGGTGCCGCCAGTGGGAATGGCGGTAGGAGCGACGGAGCTACACGGACTGGTGCTGAGAGCGCATCTGCTACAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGCGGAGGAGAACGGAGGACTGGGAGGTGAGGGAGAAATTTACATGGGTGGAATTAGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGTAGTTACAAAAGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAAAGCATGTCCGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTAGGGCTCCGCCATTTGTTGATTGTGCCCAAATATGAAGCAGCTGGCGTAAGCTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCATCTTCTTCTTTACTCCATCAATTACAGGCATCAAATTTCTGTAATTCATTGTTATTTGCAGGTTCCGCCGGTAATTGGGATTTTGACGAGGCAGGACCTGAGGCCATACAATATTCTGAGTGCATTTCCTCATCTGGAAAGAATCAAAGGCAACGAAAAACGGAATTGAACTATGAATTTTCTCATCTCATTCATGATTCAACGCAAATATACACTCTCCACACTCCACATATTCCAAACAAACTTTGTTCTTCTTCATCTGCTGCATTTCTTTCTTCTTCATATCATTGTTTCTATTATTTCTTCACCAATTTTGCCTTCTATTGA 2748 46.98 MENLKQTKQIESWRRSFALSSKPQNLTIFSSLCVHYTAPMEENSSLVTESTLTNSMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGRMHKLILSLGVSLFTSICQYSLPYLVQCTPCNPSLPASACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTSAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEDWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVSSSSSSSSFSSSSSSSLLHQLQASNFCNSLLFAGSAGNWDFDEAGPEAIQYSECISSSGKNQRQRKTELNYEFSHLIHDSTQIYTLHTPHIPNKLCSSSSAAFLSSSYHCFYYFFTNFAFY 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7891142 7895281 - ClCG11G007060.2 Cla11g00675 284497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00675 915 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 40 796 - -
Cla11g00675 915 SUPERFAMILY Clc chloride channel 108 623 IPR014743 -
Cla11g00675 915 PANTHER CHLORIDE CHANNEL PROTEIN 40 796 - -
Cla11g00675 915 CDD ClC_6_like 99 621 - -
Cla11g00675 915 MobiDBLite consensus disorder prediction 45 75 - -
Cla11g00675 915 SUPERFAMILY CBS-domain pair 625 788 IPR046342 -
Cla11g00675 915 CDD CBS_pair_voltage-gated_CLC_euk_bac 641 794 - -
Cla11g00675 915 PRINTS Plant CLC chloride channel signature 472 488 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00675 915 PRINTS Plant CLC chloride channel signature 104 112 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00675 915 PRINTS Plant CLC chloride channel signature 329 339 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00675 915 PRINTS Plant CLC chloride channel signature 315 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00675 915 PRINTS Plant CLC chloride channel signature 347 354 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cla11g00675 915 Gene3D Clc chloride channel 121 623 - -
Cla11g00675 915 Pfam Voltage gated chloride channel 187 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 552 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 608 622 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 570 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 294 313 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 230 249 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 520 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla11g00675 915 PRINTS Chloride channel signature 199 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00694 Cla-Chr10:10693947 Cla11g00675 Cla-Chr11:7891142 1.22E-06 dispersed
Cla11g00675 Cla-Chr11:7891142 Cla11g00303 Cla-Chr11:3533373 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00675 K05016 - csv:101210008 1419.45