Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00689 ATGAACAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCCGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGAATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCGGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.29 MNNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQPSETNAQLKLEEMQRKGGNFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8061773 8063463 + ClCG11G007240.2 Cla11g00689 284511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00689 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
Cla11g00689 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Cla11g00689 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 287 IPR044848 GO:0003700
Cla11g00689 296 MobiDBLite consensus disorder prediction 229 267 - -
Cla11g00689 296 MobiDBLite consensus disorder prediction 90 109 - -
Cla11g00689 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cla11g00689 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cla11g00689 296 Gene3D - 15 73 - -
Cla11g00689 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cla11g00689 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 4 287 - -
Cla11g00689 296 MobiDBLite consensus disorder prediction 218 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g02227 Cla-Chr9:39854007 Cla11g00689 Cla-Chr11:8061773 1.51E-52 dispersed
Cla10g01268 Cla-Chr10:27482619 Cla11g00689 Cla-Chr11:8061773 2.84E-59 dispersed
Cla10g01611 Cla-Chr10:31544836 Cla11g00689 Cla-Chr11:8061773 5.38E-37 dispersed
Cla11g00689 Cla-Chr11:8061773 Cla02g01833 Cla-Chr2:33478656 4.58E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62026 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00689 - - bhj:120079511 468.774