Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00693 ATGGATACGAAACCTTTGAAAATGGAGTTTCATTTCGTCTTTTTAGTGCCCTTTCTCTCACTCCTTTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAACTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGCAGAAAAAAAAAATCATTGGATAAATTCAAAAATATTTTAGAGATGTGTGCAGCAAAAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGATCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 810 49.63 MDTKPLKMEFHFVFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLNCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRKKKSLDKFKNILEMCAAKAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8177039 8179054 + ClCG11G007280.2 Cla11g00693 284515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00693 269 Gene3D - 20 152 IPR036908 -
Cla11g00693 269 Pfam Lytic transglycolase 63 148 IPR009009 -
Cla11g00693 269 Gene3D - 176 268 IPR036749 -
Cla11g00693 269 SUPERFAMILY Barwin-like endoglucanases 19 194 IPR036908 -
Cla11g00693 269 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Cla11g00693 269 PANTHER EXPANSIN-A15 12 268 IPR002963 GO:0009664
Cla11g00693 269 PANTHER EXPANSIN 12 268 - -
Cla11g00693 269 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Cla11g00693 269 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Cla11g00693 269 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Cla11g00693 269 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Cla11g00693 269 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Cla11g00693 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cla11g00693 269 Pfam Expansin C-terminal domain 177 254 IPR007117 -
Cla11g00693 269 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Cla11g00693 269 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cla11g00693 269 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Cla11g00693 269 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Cla11g00693 269 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Cla11g00693 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
Cla11g00693 269 SMART dpbb_1 63 148 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00313 Cla11g00693 CCT
Cla07g00313 Cla11g00693 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00841 Cla-Chr1:10187801 Cla11g00693 Cla-Chr11:8177039 4.12E-75 dispersed
Cla06g01586 Cla-Chr6:29404223 Cla11g00693 Cla-Chr11:8177039 1.42E-125 dispersed
Cla07g00480 Cla-Chr7:6785317 Cla11g00693 Cla-Chr11:8177039 2.57E-130 dispersed
Cla09g01772 Cla-Chr9:35114897 Cla11g00693 Cla-Chr11:8177039 6.30E-127 dispersed
Cla11g00546 Cla-Chr11:6206278 Cla11g00693 Cla-Chr11:8177039 2.22E-129 dispersed
Cla11g00693 Cla-Chr11:8177039 Cla05g02431 Cla-Chr5:35815273 1.91E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00693 - - csv:101202833 446.432