Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00761 ATGTTGAAGCAAACGGTGGATTATGCTTTCCAAGCTTCATCATGCATTTCCTCGCACCCCAAATCCAAGCTTCATCTTGAAAGTTTGAAGAGAGTAAAGGAGAACAAAAATGGTCATTGCACAAAAGTTATGCGTAGCGTCAATATGGAAAATTTGACGAGTGGGTATTTATTCCCCGAGATATCTAGACGAGAATATGAACACTCTCAGAGGTACCCAAATGCAAAGATAATTAAACTTGGAATAGGTGATACTTCAGAGCCTATACCAGAGTGTATTGCATCGGCCATGGCAAAACAAGCATTAGCATTATCAACTGTTGAAGGCTATAGTGGGTATGGAGATGAGCAGGGCAACAAGGCACTGAGGAAGAGAATTGCAGAAAAGTTTTACAAAAATATGGGCATAAAGGGGGAAGAAGTCTTTGTCTCCGATGGAGCTCAATGTGACATCTCTCGCCTTCAGATGCTTTTGGGATCACATGTAACGGTGGCTGTACAGGATCCTTCTTTCCCCGCTTACATAGATTCAAGCGTGATTTTCGGACGAGCGGGGAACCTACAAGGGCAAAACGGTAAATACGACAGAATCGTGTACATGAAGTGTACCCCCAACAACGATTTTTTTCCAGATTTGTCCAATACTCCCAGAACTGATATTATCTTCTTCTGCTCTCCCAACAATCCCACCGGAACCGCCGCCTCTGCCGCCCAACTCCGCCGCCTCGTCGACTTCGCCACCGCCAATGGTTCCATCATCGTCTACGATTCCTCCTACGCTGCTTACATCTCCGACGGCAGCCCTACCTCCATCTACCAAATTCCCGGAGCAAAACAGGTCGCAATTGAAATATCGTCCTTCTCCAAATTCGCTGGATTCACCGGCGTCCGCCTCGGTTGGACGGTGGTTCCGGAGGAGCTATCGTATTCGAATGGATTTCCGATCATTAAGGATTACGATCGAATCGTCTGTACGTGCTTCAATGGCGCCTCCAACATCGTTCAAGCCGGTGGCCTTGCTTGCCTTTCCGATGAAGGTTTCCAGGCGGTGAGCAGAGTGGTGAATTACTACAAAGAGAACGCCAACATTCTGGCGGAGGCCTTCCGAGGTTTGGGAATGGTGGTCTATGGAGGTCAAAACGCACCGTATTTGTGGGTGCATTTTCCAGGATCGAGCTCTTGGGAGTTATTTGCTGATATTTTGGAGAAGACGCACATCGTGACGATTCCGGGAAGGGGATTTGGGCCCGGCGGTGAGTCGTATATAAGAGTCAGTTCCTTCGGCCATAGAGAAACCATTCTAGAAGCTTCCGAGAGGCTCACAAGTCTTCGCAAATTAAACTTCAATTAG 1350 47.48 MLKQTVDYAFQASSCISSHPKSKLHLESLKRVKENKNGHCTKVMRSVNMENLTSGYLFPEISRREYEHSQRYPNAKIIKLGIGDTSEPIPECIASAMAKQALALSTVEGYSGYGDEQGNKALRKRIAEKFYKNMGIKGEEVFVSDGAQCDISRLQMLLGSHVTVAVQDPSFPAYIDSSVIFGRAGNLQGQNGKYDRIVYMKCTPNNDFFPDLSNTPRTDIIFFCSPNNPTGTAASAAQLRRLVDFATANGSIIVYDSSYAAYISDGSPTSIYQIPGAKQVAIEISSFSKFAGFTGVRLGWTVVPEELSYSNGFPIIKDYDRIVCTCFNGASNIVQAGGLACLSDEGFQAVSRVVNYYKENANILAEAFRGLGMVVYGGQNAPYLWVHFPGSSSWELFADILEKTHIVTIPGRGFGPGGESYIRVSSFGHRETILEASERLTSLRKLNFN 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10920689 10927337 - ClCG11G007960.2 Cla11g00761 284583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00761 449 CDD AAT_like 78 440 - -
Cla11g00761 449 Pfam Aminotransferase class I and II 76 439 IPR004839 GO:0009058|GO:0030170
Cla11g00761 449 SUPERFAMILY PLP-dependent transferases 56 440 IPR015424 -
Cla11g00761 449 Gene3D Aspartate Aminotransferase, domain 1 57 440 IPR015422 GO:0003824
Cla11g00761 449 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 13 443 - -
Cla11g00761 449 Gene3D - 87 344 IPR015421 GO:0003824
Cla11g00761 449 PANTHER AMINOTRANSFERASE 13 443 IPR019942 GO:0008483
Cla11g00761 449 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 45 441 IPR019942 GO:0008483
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00761 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - csv:101216470 803.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00945 Cla-Chr10:22345680 Cla11g00761 Cla-Chr11:10920689 0 dispersed
Cla11g00761 Cla-Chr11:10920689 Cla09g00217 Cla-Chr9:2178849 7.56E-13 dispersed
Cla11g00761 Cla-Chr11:10920689 Cla05g02577 Cla-Chr5:37004474 9.81E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g354 . . . . . . . . . . . . . . Sed11g2297 . . Bhi04g02497 Tan11g0087 Cmetu03g1388 . Hepe02g3438 . Lcy10g2329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00761 Cam11g0795 Cec11g0776 Cco11g0782 Clacu11g1063 Cmu11g0922 Cre11g1239 . . Chy03g00068 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010966 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00761 Cla_Chr11 FPKM 44.793137 45.192577 48.089424 47.765686 57.460407 52.92905 57.738564 48.653881 51.544159 52.648174