Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00766 ATGCTCTCGCCAGCGTTCATCTCAACGGCCACCATTTCTCACCCGCCGCCGTGTTTATCCGTTCAATCACCGCCTACATCACTATCCGCACGACGGACTTGTTCCAAATGGAACCTCACTAGTATCGACCGTTCTAAAAGCTTCACAAATTTTCGGCTTAATTTTCTCAAAGACCCATCTAGTTCTTCGCCGGTCGCCTGCACAACGGAAACATGTACTACCGAAGAATACGCCGAGGTCGAATCTTGCAGCAATCAGTCGGCGAGTGGATGTTTAAGTCCCTATTTGATTGCCGTTTGGCTTCGTTCTAGTCGTAGCGTCAAGGAATTAAGGGCGATACATGCTTTCATTTTGCGACATTTTACAAGTTATGTGATCTATGTTGGAAATAATTTGCTTAGTTCTTACTTGAGATTCGGAATGTTGGCTGATGCTAGAAAGGTGTTCGATGAAATGCCAGTGAGGAGTGTTGTGACCTGGACGGCTATTATTAATGGATATATTGATTTAGATTTGACTGAAGAAGCTTTAGGGTTGTTCAGTGCTTCGGTCAAGAATGGGGTGCAAGCGAATGGGAAGATGTTTGTTTGCATCTTGAACTTGTGTGCTAAGAGGTTGGATTTTGAGCTTGGGAGGCAAATTCATGGCGTCATTGTGAAAGGTAATTGGGGGAATATGATTGTTGACAGTGCCATTGTTTACTTTTATGCACAATGTAAAGATATTTCCAGTGCTTTTGTTGCATTTGAACATATGCCGAAGCGGGATGTTGTTTGTTGGACTTCCATGATTACTTCTTGTTCCCAACAAGGGCTTGGACGAGAAGCAATTTCAATGTTTTCAAATATGCTAAGCAATGGATTTCTTCCAAATGAGTTTTCTGTATGCAGTGTTCTCAAGGCTTGTGGAGAAGAGAGGGAGTTGAAGATTGGGAGACAGTTACATGGTTTGATAATTAAGAAAATAATCAAGAATGATGTTTTTGTTGGGACTTCATTGGTTGATATGTATGCCAAGTGCGGGAATTTGGCGGATTCTAGAGAAGTATTCAATGGGATGAGGAATAGAAACACGGTTACATGGACATCGATCATAGCTGGCTATGCACGGGAGGGGCTCGGTGAGGAGGCCATTAACCTCTTTAGGTTGATGAAGAGGCAAAGGATTCCTGCCAATAACTTGACCATTGTAAGTATTCTCCGTGCTTGTGGCTCAATTGGGGCGTCATTGACTGGGAGGGAAGTCCATGCCCAGATTGTAAAAAATTCATGTCAGACTAATATACACATAGGAAGCACTCTAGTTTGGTTCTACTGTAAATGCAGGAATCAACTTAAGGCCTCCATGGTTCTTCAGCTGATGCCGCTTAGAGATGTGGTTTCGTGGACGGCTATCATTTCTGGATGTGCTCATCTTGGGCACGAGTCTGAGGCTCTTGAGTTTCTAAAAAACATGATAGAGGAAGGAGTTGAACCAAATTCCTTTACTTATTCATCGGCTTTAAAAGCGTGCGCGAAGATGGAAGCGATCCTCCAAGGGAAATTGATCCACTCCTCTGCTAATAAAACATCTGCATCGTCCAATGTTTTTGTGGGAAGTGCACTTATTTACATGTATGCAAAATGTGGATATGTAACCGAAGCTTCTCAAGTTTTCGACAGCATGCCGGTGAGGAATTTGGTTTCTTGGAAGGCTATGATTTTATGCTATGCTAGGAATGGTCTCTGCCGAGAGGCGTTGAAGCTCATGTACCGGATGCAGGCTGAAGGTATCGAAGTGGATGACTACATTCTTGGAACAGTTTATGGAGCTTGTGGAGATGTGAAGTGTGATGTGGAATCAACACTTGAATACAGGTTGCAAACTCATTGA 1872 43.16 MLSPAFISTATISHPPPCLSVQSPPTSLSARRTCSKWNLTSIDRSKSFTNFRLNFLKDPSSSSPVACTTETCTTEEYAEVESCSNQSASGCLSPYLIAVWLRSSRSVKELRAIHAFILRHFTSYVIYVGNNLLSSYLRFGMLADARKVFDEMPVRSVVTWTAIINGYIDLDLTEEALGLFSASVKNGVQANGKMFVCILNLCAKRLDFELGRQIHGVIVKGNWGNMIVDSAIVYFYAQCKDISSAFVAFEHMPKRDVVCWTSMITSCSQQGLGREAISMFSNMLSNGFLPNEFSVCSVLKACGEERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFNGMRNRNTVTWTSIIAGYAREGLGEEAINLFRLMKRQRIPANNLTIVSILRACGSIGASLTGREVHAQIVKNSCQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSSALKACAKMEAILQGKLIHSSANKTSASSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILCYARNGLCREALKLMYRMQAEGIEVDDYILGTVYGACGDVKCDVESTLEYRLQTH 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11018251 11020122 - ClCG11G008010.1 Cla11g00766 284588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00766 623 Gene3D Tetratricopeptide repeat domain 310 407 IPR011990 GO:0005515
Cla11g00766 623 Gene3D Tetratricopeptide repeat domain 517 621 IPR011990 GO:0005515
Cla11g00766 623 Gene3D Tetratricopeptide repeat domain 408 516 IPR011990 GO:0005515
Cla11g00766 623 Gene3D Tetratricopeptide repeat domain 96 216 IPR011990 GO:0005515
Cla11g00766 623 Pfam PPR repeat family 457 506 IPR002885 -
Cla11g00766 623 Pfam PPR repeat family 356 403 IPR002885 -
Cla11g00766 623 Pfam PPR repeat family 255 302 IPR002885 -
Cla11g00766 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Cla11g00766 623 TIGRFAM PPR: pentatricopeptide repeat domain 561 594 IPR002885 -
Cla11g00766 623 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Cla11g00766 623 TIGRFAM PPR: pentatricopeptide repeat domain 460 494 IPR002885 -
Cla11g00766 623 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Cla11g00766 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Cla11g00766 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 477 607 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 288 494 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 173 405 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 104 303 - -
Cla11g00766 623 Pfam PPR repeat 130 155 IPR002885 -
Cla11g00766 623 Pfam PPR repeat 561 591 IPR002885 -
Cla11g00766 623 Pfam PPR repeat 533 559 IPR002885 -
Cla11g00766 623 Pfam PPR repeat 158 188 IPR002885 -
Cla11g00766 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 173 405 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 477 607 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 104 303 - -
Cla11g00766 623 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 288 494 - -
Cla11g00766 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Cla11g00766 623 Gene3D Tetratricopeptide repeat domain 224 309 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00766 - - - csv:101216949 1104.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00766 Cla-Chr11:11018251 Cla05g00861 Cla-Chr5:8519771 1.57E-30 dispersed
Cla11g00766 Cla-Chr11:11018251 Cla09g00659 Cla-Chr9:6258153 1.55E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g351 . . . . . . . . . . . . . . . . . Bhi04g02501 . . . Hepe02g3441 . Lcy10g2332 . . . . . . . . . Cone17ag1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00766 . . . . . . . . Chy03g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012853 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00766 Cla_Chr11 FPKM 6.278627 6.376642 6.513384 5.724898 7.29635 6.74835 8.201816 6.662591 8.128845 8.197096