Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00770 ATGGCGGACCGCCGGAGATGGTTAAGTCACCGGAAAATTTATTGCCTAAAAATACATGTTTGGCCCTGTTTTGCTTGTTCCCAAAAACCCAGTTTTCATTTTTGTTTTAGAATGAAAGCCAGCCTATTAAATGTAATTGTTGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATATCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCCTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTATTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACATTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG 1275 44.16 MADRRRWLSHRKIYCLKIHVWPCFACSQKPSFHFCFRMKASLLNVIVVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDISHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGIWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11078086 11083974 + ClCG11G008050.2 Cla11g00770 284592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00770 424 Pfam Seed dormancy control 218 293 IPR025422 GO:0006351|GO:0043565
Cla11g00770 424 Gene3D - 132 184 - -
Cla11g00770 424 PANTHER TRANSCRIPTION FACTOR TGA9 59 423 - -
Cla11g00770 424 Coils Coil 159 179 - -
Cla11g00770 424 SUPERFAMILY Leucine zipper domain 133 174 IPR046347 GO:0003700|GO:0006355
Cla11g00770 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 136 151 IPR004827 GO:0003700|GO:0006355
Cla11g00770 424 Coils Coil 212 232 - -
Cla11g00770 424 Pfam Basic region leucine zipper 133 175 IPR004827 GO:0003700|GO:0006355
Cla11g00770 424 ProSiteProfiles DOG1 domain profile. 201 419 IPR025422 GO:0006351|GO:0043565
Cla11g00770 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 131 175 IPR004827 GO:0003700|GO:0006355
Cla11g00770 424 SMART brlzneu 129 182 IPR004827 GO:0003700|GO:0006355
Cla11g00770 424 PANTHER TRANSCRIPTION FACTOR TGA7 59 423 - -
Cla11g00770 424 Coils Coil 300 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01072 Cla11g00770 CCT
Cla08g01072 Cla11g00770 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00714 Cla-Chr3:8635118 Cla11g00770 Cla-Chr11:11078086 9.37E-07 dispersed
Cla07g00891 Cla-Chr7:24567343 Cla11g00770 Cla-Chr11:11078086 1.09E-123 dispersed
Cla10g01652 Cla-Chr10:32179883 Cla11g00770 Cla-Chr11:11078086 4.22E-84 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62030 PF14144 DOG1 2.30E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00770 K14431 - csv:101217648 685.256