Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00772 ATGGCTTTGAGTGCTATGAATCCAGGTCTCGCCTTATTGTTTTCACTTCTTTTGGTTGGTTGTTGCGGCTCTGCAGCTAATGTGGTATTGATTGGGACCAACGTTACTCTTTCGTTCGACTCCATTGAAGCTAATTTCGCTCCTTCAATAGAAAGTTCAGGGGAACCTGGGGTGTTATTTCTGGCCAAACCTCTGGATGCATGCTCGACATTGGAAAATAAAGCTGAGCTGCCTGTAAACTCCAGTTCACCATTTACGCTTATAATTAGAGGAGGATGTAGTTTCGAGGATAAAGTGAGGAGAGCCCAAGTGGCTGGATTTAAAGCTGCAATCATCTATGACAATGAAGATGGTGGCTTAATTGCGACTTTAATATTTCCTGGTCATAACTTTAAAGAGTTTGCAGTGGCAGGGAGCTCGGCTGGCATTAAAATACATGCTGTATTTGTTACTAAAACATCTGGCGAGACATTGAAGAAGTACGCAGGCTTGGCTAACGTTGAGATATGGATAGTTCCAAGCTTTGAAAACTCTGCATGGTCCATCATGGCTATCTCCTTTATTTCTCTTCTTGCAATGTCTGCAGTGCTCGCTACTTGTTTCTTCGTTCGTAGGCATCGAATAAGACGGGGACGTCCTCGATCTTCTCATGCTCAAGAGTTTCGGGGAATGAGCAGGCGTGTAGTAAAAGCAATGCCAAGCCTGATATTTACTACTGCTTTAGAGGATAATTGCACATCAGTAACATGTGCCATATGCCTTGAGGACTATACTGCTGGCGAGAAGCTCAGAATTCTACCATGTCGTCACAAATTTCATGCCCTCTGTGTGGACTCTTGGCTTACTGCTTGGAGAACCTTCTGCCCAGTTTGCAAGCGAGATGCAAGAACTAGCACTGGTGATCCACCACCTTCAGAATCCACACCATTGCTTTCAAGCGCTCCCAGTTCTGTTGCTTCATCCTCAATATTATCTTCCGTGAGATCATCATTACCACCAAGCTCAGCCATTCAAATATCCCCAGCATCAAGATCGCCTTCAGTATCTCGGAACCACTCTCTCTCAAGCACCCCTTACCTTCAGCAGTCTCTGAGATCCTCCTACCGTCAATCTCCATCCTTGAGCGTGAGCAGAAGTTCAGTTGAACTTAGAAATGCATCTTCCCAAAGATCTTACACTTCTCATTTAGTTTCGCCGTATTCCTCGTGTTACCCATCCATTTCACCTTTACATTCAAGATACATGATTCCACTTATTCCAAGTCCAAGCAATGCCTCACCAAGCATCATTGGTTCCTCTAGTCATCAACATAATCCCTTACATTGTAGCGGGTCAGCTGCAAGCTTTTCTCCATTTGCTTCGGCCCAGTCTCTTCCTGAATGCTAA 1386 44.66 MALSAMNPGLALLFSLLLVGCCGSAANVVLIGTNVTLSFDSIEANFAPSIESSGEPGVLFLAKPLDACSTLENKAELPVNSSSPFTLIIRGGCSFEDKVRRAQVAGFKAAIIYDNEDGGLIATLIFPGHNFKEFAVAGSSAGIKIHAVFVTKTSGETLKKYAGLANVEIWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGRPRSSHAQEFRGMSRRVVKAMPSLIFTTALEDNCTSVTCAICLEDYTAGEKLRILPCRHKFHALCVDSWLTAWRTFCPVCKRDARTSTGDPPPSESTPLLSSAPSSVASSSILSSVRSSLPPSSAIQISPASRSPSVSRNHSLSSTPYLQQSLRSSYRQSPSLSVSRSSVELRNASSQRSYTSHLVSPYSSCYPSISPLHSRYMIPLIPSPSNASPSIIGSSSHQHNPLHCSGSAASFSPFASAQSLPEC 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11097556 11102122 - ClCG11G008080.2 Cla11g00772 284594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00772 461 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 394 - -
Cla11g00772 461 SUPERFAMILY RING/U-box 243 305 - -
Cla11g00772 461 SMART ring_2 250 291 IPR001841 -
Cla11g00772 461 Gene3D - 28 171 - -
Cla11g00772 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 297 IPR013083 -
Cla11g00772 461 SUPERFAMILY PA domain 76 156 IPR046450 -
Cla11g00772 461 ProSiteProfiles Zinc finger RING-type profile. 250 292 IPR001841 -
Cla11g00772 461 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 10 394 - -
Cla11g00772 461 Pfam Ring finger domain 249 292 IPR001841 -
Cla11g00772 461 MobiDBLite consensus disorder prediction 329 356 - -
Cla11g00772 461 CDD mRING-H2-C3H2C2D_ZSWM2 249 292 - -
Cla11g00772 461 MobiDBLite consensus disorder prediction 295 316 - -
Cla11g00772 461 Pfam PA domain 86 158 IPR003137 -
Cla11g00772 461 MobiDBLite consensus disorder prediction 300 316 - -
Cla11g00772 461 CDD PA_C_RZF_like 24 179 IPR044744 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00772 K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] - csv:101218128 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00772 Cla-Chr11:11097556 Cla07g01061 Cla-Chr7:27190640 7.34E-12 dispersed
Cla11g00772 Cla-Chr11:11097556 Cla02g00071 Cla-Chr2:705678 1.95E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00772 Cla_Chr11 FPKM 7.486082 7.289281 3.434268 3.687867 4.035164 5.441282 5.333843 16.96172 15.578524 15.952837