Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00778 ATGGAGACGTCGCCGGCGTCTTCTGAGGGTTCCTCGCGAGAGGTTCAATGCATCGGAAAACTCGAAATAGTGAGGCCAAAACCTGCCAGTGGTTTTCTCTGCGGCTCAATCCCCGTTCCAACTGATAAAGAATTCCACGCCTTCAATTCTGCTCTAGTTCCTTCGCGCCAAACCGTAACAGCTCCGCGGTATCGAGTGCTTCCGACTGAGACAGATCTCAATTTACCTCCACTTCCTTCTAACTCCCATGAAAAGGTTCTCCCGATTGGGGCACTTCAGTCAAAAGGCGCTGGAGATTTACCTTGGGATGGGGGTGCTGTTGCCTCGAATCTTACCAGAAAATGTGAAGCTCTTGCTGTATCTGGTCTGGTAGAATATGGAGATGAAATAGATGTGATAGCTCCAGCTGACATTCTTAAGCAGATCTTTAAAATGCCTTATTCGAAGGCCCGGTTATCCATTGTTGTTTATCGCATTGGACAAGCACTTGTTCTGAGTACAGGGCCTGATGCTGAAGAAGGAGAAAAGCTGGTTAGGAGGCATAAAAATCAATCAAAGTGTGCAGAACAATCTTTATTTTTGAATTTTGCCATGCATTCAGTTAGAATGGAGGCTTGTGATTGTCCTCCAACTTATCATGCTACCACGGAGGAGCAATCTAAGTCATCTGTTCTTCCTGGAGGAAGTACATCTCAGGTCCTGGAGCAGACTGATGGTGTTTCACAAAAGGATTTTAATTCTTGTGCCCAATATAAGGAAGTTAAGCAAGATGCCTTCTTTTGGGGAAGTAAGAAGGGAAAAAGAAGTAAGAAGCATGATCCCGTCAAAAAGGTTTCGGAAGTTGGTGCGAAGCCCAGGTGCTCGAATCAAGAGTCTGAAAAGCATAGAAGTGTTGGTGATGATGAGTTCCTACGAGTTCTGTTTTGGCAATTTTACAATTTTCGTATGCTCATTGGTAGTGACCTGCTTCTGTTCAGTAATGAAAAGTATATCGCTGTCAGTTTGCATTTATGGGATATTACTCGACAGGTCACTCCACTAACTTGGCTTGAAGCTTGGCTTGATAATGTCATGGCAAGTGTTCCTGAATTAGCCATTTGTTATCATGAAAATGGTGTTGTTCAGGGATATGAGCTTCTGAAGACAAATGATATATTCCTATTAAAAGGGGTCTCTGATGATGGTACTCCTGCTTTCCACCCTTATGTGGTACAACAAAATGGCCTTTCTGTCCTGAGATTTCTCCAAGAAAACTGCAAACAAGATCCTGGGGCTTATTGGGTACTTTATAAAGGTGCGGGTGAAGATGGGATTCAACTTTTTGATCTTTCTCTAATTCCTAAGAACCATTCCCCTAGTGATTTTGATGATAGCTCGAATTCCTTACCCTCGATGCTATATAGAGGGAGATGCGACTCCTTATTTTCATTTGGCACACTCCTCTATCGTATAGCCCACCGACTCTCACTTTCTATGAATCCGTCTAACAAGGTCAAATGTGCAAGGTTCTTTAAGAAGTGTTTAGATTTTCTTGATGAGCCTGATCACTTGGTGGTTCGTGCATTTGCTCATGAACAGTTTGCAAGGCTCATTTTGAACTATGACGAAGATTTAGATTTAACATTGGATTCTCTTCCACTGGGATGTGAAGTTGAAGTTGTGGATGCTGAAGAAGAAGAGTCGTTGGACTTCCTTAGCAGTTTATCAGAAACGGGTAAGTATGAAGGTTCCTCCTCTCTTGTAGGAGAAGACAAACTTGGAGAAGGCAATCCACATCATCAAAATTTGTTGCCGGAAGCTTCTTCATCAATAACGTCAGAGGCCTATGTATCTTCTCCAAGAATGATATCGTTGAGAGATCCACAGGGGATAGAACCACCAGTGGCGGCAGAAAATTCCCAAAACGAGGAAAGCTTCGCAGTCTGTAACGTTGCTCCAACTGCCTCACATGTAGTTCAGACTGTTGCTGATCCAATATCTTCCAAGTTAGCTGCAATACATCATGTTTCTCAAGCTATCAAGTCTCTTAGATGGATGCGCCAGCTACAAAGCTCAGAACCAAAGATGGTGGACCATATTGGTGCGGTGCATGATAGCCTACCTTCTCCTATTAATATCTCCGTCTGTGCATGTGGTGATATTGACTGTATTGAAGTCTGCGACCTTCGGGAATGGCTTCCAAAATCAAAATTGGACCATAGATTATGGAAATTGGTTCTTTTGCTTGGAGAGTCTTATTTAGCTCTTGGCCAAGCATATAAGGAGGATGGCCAGCTGCATCAGGCCTTAAAAGTTGTAGAATTGGCATGTCTTGTTTATGGATCTATGCCCCAGGAACTTGAAGAGACTAGATTCATTTCCTCAATGGTCGGCACCCCACTTTTGCAGAATAAATTGAATGATAAAGATGTGAAATTGAGATCATTCAATCAAGATCTGAAAGAAGTTGATCTGCACTGTGATGACATTTCATTAGACCATTATTCTTCCACTTATCTGTTTTGGGCCAAGACATGGACATTAGTTGGAGATGTATACGTGGAGTTCCATTCTATATATGGTAGACAAGCCTCTGAAAAAGCAGAAAATAACTTTTCCACAAGAGAATTGAAGATCTCATCCGAAGTCGTGAAAGAAGTTAATCGGCTCAAAAAGAAGCTTGGGAAATTTAAAAACTGCAATGCTTGCTCCTTGGTAAACTGCAGCTGCCAGAGTGATAGGGCAAACAGTGGAAGCAGTGCTAGCAGTAGTAGGAGGGAATCAATTGTCTACAGCAGAAAACACAATAAAAAGATGCATTTTAAGACTTCAACTGCCCACTCAGTCTCAGGAGATCATGAACATGGTAATAATTGTCCAAAGATTGAGAATGGAATGGGCTCTAACCCTGGACATCTAGAGCTGAAAGGAAATGCTCGAATCCCAGTAGAAACTTGTAATATGGTTCATTCTGGGGCAAAAGTTTCCGTGGGTAATTCTGAAGAAGTGGAGGATAATGTGGAGACTTGTGGTAATCTTCTTAGTGCGACTTCTCAATCTCATCTGAATTCGAATGAATCTCAGAAAGTTAAAATGGGTGGAATATTTAAGTATCTTGGGGGTCCTGTTTCTAGAGGATCAGAATGCAATTTAACTGCAGCCCTAAGCTGTTATGAAGAAGCTAGAAAGGCTTTGGGGCAACTCCCAGCTGGATCCGTTGAACTGCAATCTGTTTTGAGTAAAAAGGGTTGGGTTTGCAATGAACTAGGCCGATGGAGACTTGAAAGAAAGGAGCTGAAAAAAGCTGAAATGGCATTTGCAGATGCCATTGATGCATTTAGAGCTGTTTCTGATCATACAAACATCATACTGATTAACTGCAATTTGGGTCATGGTAGGCGCGCATTAGCTGAGGAGATAGTTTCAAAGATCGAAGATCTAAAAGTACATTCAATTGTGCAGAATGCATATTATCAAGCATTGGAGACTGCCGAACTGGAATATACTGAATCACTAAGATATTACGGGGCAGCAAAAAATGAACTGAATGCTGTAGCTGAAGATTCTATTGCTTTGCCTGGCAACCTGAGGGCTGAGGTTTACACACAGCTTGCTCACACATATCTGAGGCTTGGTATGCTTTTGGCAAGGCTAGATATAAACGGGGTACATGATATTGAAACATTGGAAGATGTCGGGTCAGTTTACACAAATTCTACTAGTAGAGGAGCTAAGAAAGGATTGAAAAAGCATAAGATTTCAGCAAATGATGCCATTAGGGAGGCACTATCTATATATGAATCTCTGGGTGACATACGTAAACAGGAAGCTGCATATGCTTATTTCCAACTAGCTTGCTATCAAAAGAATTGTTCTCTGAAGTATTTGGAGTCAGATGGCTGGAAAAAGAGCTTGTCTAAAGATGATAACAGCATTCTCCAACGGGTAAAACAGTATGCTTCCTTGGCTGAGAGGAACTGGCAGAGAGCCATGGAATTTTATAGCCCTAAAACACATCCCACTATGTATCTGACCATTTTGGTTGAACGATCATCTCTTTCACTAAGCCTGTCGAGCTCTTTACACTCAAATGCAATGCTAGAATTGGCATTCTCTCGCATGCTTGAAGGACGACATATTTCTGATACTGATGCGGATTCTCTGAAAACGAAGTACTCCGAAATACATTCAAAATTTTGGAATCATTTGCAAATGCTATTGAAGAAAATGGTGGCATTGACACTTCTAACAAGTTCAGGCAAATCTTGTGCATCTCAACCTCATATGACACCCAACAGATCTGGTGAAGCTTCAAGGCTCAGGGAGCTTTACAAAATGTCTTTGAAGTCCTGTGACTTCAGAGAACTGCACAAGATGCATGCCATATGGACATCAAAACTGGAATATTGA 4389 41.88 METSPASSEGSSREVQCIGKLEIVRPKPASGFLCGSIPVPTDKEFHAFNSALVPSRQTVTAPRYRVLPTETDLNLPPLPSNSHEKVLPIGALQSKGAGDLPWDGGAVASNLTRKCEALAVSGLVEYGDEIDVIAPADILKQIFKMPYSKARLSIVVYRIGQALVLSTGPDAEEGEKLVRRHKNQSKCAEQSLFLNFAMHSVRMEACDCPPTYHATTEEQSKSSVLPGGSTSQVLEQTDGVSQKDFNSCAQYKEVKQDAFFWGSKKGKRSKKHDPVKKVSEVGAKPRCSNQESEKHRSVGDDEFLRVLFWQFYNFRMLIGSDLLLFSNEKYIAVSLHLWDITRQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTNDIFLLKGVSDDGTPAFHPYVVQQNGLSVLRFLQENCKQDPGAYWVLYKGAGEDGIQLFDLSLIPKNHSPSDFDDSSNSLPSMLYRGRCDSLFSFGTLLYRIAHRLSLSMNPSNKVKCARFFKKCLDFLDEPDHLVVRAFAHEQFARLILNYDEDLDLTLDSLPLGCEVEVVDAEEEESLDFLSSLSETGKYEGSSSLVGEDKLGEGNPHHQNLLPEASSSITSEAYVSSPRMISLRDPQGIEPPVAAENSQNEESFAVCNVAPTASHVVQTVADPISSKLAAIHHVSQAIKSLRWMRQLQSSEPKMVDHIGAVHDSLPSPINISVCACGDIDCIEVCDLREWLPKSKLDHRLWKLVLLLGESYLALGQAYKEDGQLHQALKVVELACLVYGSMPQELEETRFISSMVGTPLLQNKLNDKDVKLRSFNQDLKEVDLHCDDISLDHYSSTYLFWAKTWTLVGDVYVEFHSIYGRQASEKAENNFSTRELKISSEVVKEVNRLKKKLGKFKNCNACSLVNCSCQSDRANSGSSASSSRRESIVYSRKHNKKMHFKTSTAHSVSGDHEHGNNCPKIENGMGSNPGHLELKGNARIPVETCNMVHSGAKVSVGNSEEVEDNVETCGNLLSATSQSHLNSNESQKVKMGGIFKYLGGPVSRGSECNLTAALSCYEEARKALGQLPAGSVELQSVLSKKGWVCNELGRWRLERKELKKAEMAFADAIDAFRAVSDHTNIILINCNLGHGRRALAEEIVSKIEDLKVHSIVQNAYYQALETAELEYTESLRYYGAAKNELNAVAEDSIALPGNLRAEVYTQLAHTYLRLGMLLARLDINGVHDIETLEDVGSVYTNSTSRGAKKGLKKHKISANDAIREALSIYESLGDIRKQEAAYAYFQLACYQKNCSLKYLESDGWKKSLSKDDNSILQRVKQYASLAERNWQRAMEFYSPKTHPTMYLTILVERSSLSLSLSSSLHSNAMLELAFSRMLEGRHISDTDADSLKTKYSEIHSKFWNHLQMLLKKMVALTLLTSSGKSCASQPHMTPNRSGEASRLRELYKMSLKSCDFRELHKMHAIWTSKLEY 1462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11174851 11181565 - ClCG11G008140.1 Cla11g00778 284600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00778 1462 MobiDBLite consensus disorder prediction 904 920 - -
Cla11g00778 1462 MobiDBLite consensus disorder prediction 572 594 - -
Cla11g00778 1462 PANTHER ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 18 1458 - -
Cla11g00778 1462 MobiDBLite consensus disorder prediction 904 925 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00778 - - - csv:101217892 2656.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1418 . . . . . . . . . . . . . . Sed03g0679 . . Bhi04g02520 Tan11g0067 Cmetu03g1551 . Hepe02g3451 . Lcy10g2342 . . . . . . . . . . . . . . . Blo17g00153 . . Bda13g01444 . Bpe14g00411 . Bma02g00188 . . . . . . . . . . . . . . . . Cla11g00778 Cam11g0812 Cec11g0793 Cco11g0799 Clacu11g1046 Cmu11g0907 Cre11g1256 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011266 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00778 Cla_Chr11 FPKM 5.366744 4.676617 3.442957 3.52231 0.384796 0.794962 0.545915 3.375835 2.664933 2.501258