Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00782 ATGAAGCCACTCACTCTTCTTTGCATCTTCATCATTCTTTCCATTCTCTTGCAGGGTTTTTCACAGGCTTCCACTGCTGTGGATGAAGGGACCAACACAGTAGCTCTCAGCAAAAAGTATCACTATCATCCAAAAATCAATTGCAAGAGTGAATGCTCAAGGAGATGTAGTAAAGTGTTCAGAAAGAAGATATGTTTGCGTGCTTGTGGAACTTGCTGCAGTCGTTGCCACTGCGTTCCGCCCGGAACTTACGGCAACCACCAAGCTTGCCCTTGCTATGCTCGCCTCAAGACCCATGGCAATAAGCCCAAATGCCCCTAA 321 46.73 MKPLTLLCIFIILSILLQGFSQASTAVDEGTNTVALSKKYHYHPKINCKSECSRRCSKVFRKKICLRACGTCCSRCHCVPPGTYGNHQACPCYARLKTHGNKPKCP 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11300738 11302777 + ClCG11G008180.2 Cla11g00782 284604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00782 106 PANTHER GIBBERELLIN-REGULATED PROTEIN 9 9 106 - -
Cla11g00782 106 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 9 106 - -
Cla11g00782 106 Pfam Gibberellin regulated protein 47 106 IPR003854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00782 - - - csv:101218129 213.386
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01683 Cla-Chr1:31785491 Cla11g00782 Cla-Chr11:11300738 1.07E-15 dispersed
Cla08g01426 Cla-Chr8:27124542 Cla11g00782 Cla-Chr11:11300738 1.30E-21 dispersed
Cla10g01011 Cla-Chr10:23470742 Cla11g00782 Cla-Chr11:11300738 6.41E-16 dispersed
Cla10g01300 Cla-Chr10:27912375 Cla11g00782 Cla-Chr11:11300738 8.99E-15 dispersed
Cla10g01383 Cla-Chr10:28939087 Cla11g00782 Cla-Chr11:11300738 1.17E-17 dispersed
Cla11g00782 Cla-Chr11:11300738 Cla05g01870 Cla-Chr5:30557391 6.93E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1414 . . . . . . . . . . . . . . . . . Bhi04g02523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00782 Cam11g0814 Cec11g0796 Cco11g0801 Clacu11g1042 Cmu11g0903 Cre11g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014690 0 1 0 0 0 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 0 1 0 0 1 2 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00782 Cla_Chr11 FPKM 2.015946 1.349264 3.636248 2.638254 3.089217 5.500696 6.605932 2.819727 2.714104 4.295519