Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00786 ATGGCGGTTAGTGGGCCGGCTTCCAGTTCAGAGAGAGCCTGGAGTGACTCTCGCAAGGGCATGTCCAGTGATAACATTAAGGGTTTGGTCTTAGCTTTGTCTTCCAGTTTCTTCATTGGTGCCAGCTTCATTGTCAAGAAGAAAGGCCTTAAGATAGCCGGGGGTTCTGGTGTTAGGGCAGGCGCTGGCGGTTATTCTTACTTGTATGAACCGTTATGGTGGGTCGGCATGATAACCATGGTTATAGGGGAAATTGCTAATTTTGCAGCTTATGCATTTGCACCAGCTATTCTTGTAACTCCCCTCGGTGCACTCAGTATAATTATCAGGCAAGAGGACAAACTGTCGCTGTTGTTGTTAACGCATTTTGGCATTCACCGTGTTTTGACCATTTTGTGGCATGTTATGTGCAGTGCTGCTCTTGCTCATATTATATTAAGGGAGCGATTACACATTTTTGGTATTCTGGGTTGTGTGTTATGTGTTGTAGGGTCAACAACAATTGTTCTACATGCACCCCAAGAGCGTGAGATAGAATCTGTCAAGGAAGTGTGGGATCTTGCGACAGAACCAGCTTTCCTTTTGTATGCTGCTTTGATGATAGCCACAACTCTCGTACTGATAATCCACTTTGTGCCTCATTATGGGCAGACATATGTGATGGTCTACATAGGGGTTTGTTCTATTGTGGGGTCACTTTCAGTTATGAGTGTTAAAGCACTTGGCATTGCCCTGAAGTTAACGTTTTCTGGAATGAATCAGTTAACATATCCTCAAACTTGGGCCTTCACAATGGTAGTCATTACTTGTGTGATCATTCAAATCAATTATCTAAACAAGGCTCTTGATACTTTCAACACTGCTGTAGTATCCCCTACATACTATGTGATGTTTACATCCTTGACCATCTTGGCTAGCATAATTATGTTTAAGATAAGCTTTTACTGCCTCGATTACATAGAAACTCCAGGTCCCGAAATTTCCAGAATAGCCTACAATCCAAAAGCACCAACCTATGCTTCCTCTTCTATCAAGGCAGCCAGTTCCCGGGATGCCCAATGCGGTTATTCCAATTCGAGCGTAAAACAAGAATGTCTTCAAAGCACCAACCATAGGGCTGAAAAGGCGCTTACATTTGGTTGGATGATACCCATATCAGATTGGGATCGACAGAGTGCAATCCAAATTTTCACACAAATGTGTGGTTTTGTGACAATTCTCGCTGCGTCGACGACACCATCTTTTTCAATGCGACTTTCTAAACACATAGAAGAAGGTTGTGAACTTGAAGCCATTCCACTTCAGCGTCAAGCATCATTGTGA 1323 43.24 MAVSGPASSSERAWSDSRKGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKIAGGSGVRAGAGGYSYLYEPLWWVGMITMVIGEIANFAAYAFAPAILVTPLGALSIIIRQEDKLSLLLLTHFGIHRVLTILWHVMCSAALAHIILRERLHIFGILGCVLCVVGSTTIVLHAPQEREIESVKEVWDLATEPAFLLYAALMIATTLVLIIHFVPHYGQTYVMVYIGVCSIVGSLSVMSVKALGIALKLTFSGMNQLTYPQTWAFTMVVITCVIIQINYLNKALDTFNTAVVSPTYYVMFTSLTILASIIMFKISFYCLDYIETPGPEISRIAYNPKAPTYASSSIKAASSRDAQCGYSNSSVKQECLQSTNHRAEKALTFGWMIPISDWDRQSAIQIFTQMCGFVTILAASTTPSFSMRLSKHIEEGCELEAIPLQRQASL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11325123 11334311 - ClCG11G008220.2 Cla11g00786 284608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00786 440 MobiDBLite consensus disorder prediction 1 22 - -
Cla11g00786 440 PANTHER MAGNESIUM TRANSPORTER-RELATED 12 111 - -
Cla11g00786 440 PANTHER MAGNESIUM TRANSPORTER-RELATED 134 409 - -
Cla11g00786 440 PANTHER UNCHARACTERIZED 134 409 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cla11g00786 440 Pfam Magnesium transporter NIPA 135 311 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cla11g00786 440 Pfam Magnesium transporter NIPA 24 109 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cla11g00786 440 PANTHER UNCHARACTERIZED 12 111 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00786 K22733 NIPA, SLC57A2S; magnesium transporter - csv:101218991 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01016 Cla-Chr5:10337415 Cla11g00786 Cla-Chr11:11325123 1.57E-161 dispersed
Cla09g00961 Cla-Chr9:10100819 Cla11g00786 Cla-Chr11:11325123 3.38E-118 dispersed
Cla11g00786 Cla-Chr11:11325123 Cla11g01310 Cla-Chr11:26604981 1.27E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1400 . . . . . . . . . . . . . . Sed03g0686 . . Bhi04g02525 Tan11g0061 Cmetu03g1701 . Hepe02g3456 . Lcy10g2347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00786 Cam11g0818 Cec11g0800 Cco11g0805 Clacu11g1038 Cmu11g0899 Cre11g1262 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000165 6 10 5 4 5 5 8 5 6 6 6 5 4 5 6 7 5 7 8 5 6 6 6 5 5 6 6 21 17 4 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00786 Cla_Chr11 FPKM 177.967163 178.29393 140.29422 135.322037 151.048431 169.976349 146.980103 126.687737 118.516945 116.242096