Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00797 ATGCTTGCTTGTGATCATGGTTTTAAACTTCAATCGAGCATAACTATCCCATCTCCAAGAGTCCGAGAAAGGCTAGACCTCGACGAAAGCTTGCACTTCTTCCGCCGTCGAAAAGTAAGTTGTTGTTTGCTTCTGCCAGAATCGTATCATCGGAGACGCAGGCGGCGACTGTCCTCTCTCGCTGCTGGTTTTATCACTGTCCACCTTGCGACAGCCACCGCGACTGAAGGATTAAGGAACAATATGTTCAAGAAGGCGGCGGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGATGCCGATATTGATGTCTTGCTTCCTCCCAAGGTTGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTCGACATTGATGGGAGAGGAACTGAAATATTCCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCCTTTGTTTTGAAGGGGGGTGAAGTCTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCTGGTATTCACATTCCTGCTGAAGGTCTTCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCAGGTTTACGTGGAAAGGCTTTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCGGTAGAGGGTCATTATGTGCCGAATGCAGGTTTCTTGGAAGATGTTGTATATGGAGATCCTGTTTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGAAACTGCTGCTGATGCTTCAAATTATGGACAGAATGACAGCAGCAATAAAGAAGTTGGGGGATCTGTTGATGAAACTACAAGTGATGTTCTTGATGAGCCTGGGGTTGTTCTAACAGCACAGACAGATTCAACTACTGATGATATCGTTTCTAGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTGAGGAACCAAATGTGCCACATACTCTATCAGCTGATGATGTGGATAAGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACCGTGAAAGACAAAGACTTTCCACTTCCTGGAAGCACTCTATGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCTTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTATAGTGAAAGAAGACAAGCATAAAAAAGAGACGGTTTTGTACTCTGTTAACCGTAAGCATCCAGACTACACTTCCTTTAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGCGACAATCATGGTCCAAAAGAAAGTTTATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTTTTGCTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACATTGAGAAAGAAAAATTGGAGAAACCAACAGAAAAGTCCAGAGTGGTCTTGGACGCAATATTGTGTGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAGACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACAAGACTTTCTGGGTTGGAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCCGAGTTGCCTGGTAAAAAAGGGTATGAAGTTGTGGTCCAAGGTGGAGTCATCGATGACTTGGCAAGACATCTGATTGAACAATATGGGATTCCAAAAAAGTACATTGAAGTACTTGATAAAACAAGGAAATGA 2085 43.02 MLACDHGFKLQSSITIPSPRVRERLDLDESLHFFRRRKVSCCLLLPESYHRRRRRRLSSLAAGFITVHLATATATEGLRNNMFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDADIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDIDGRGTEIFPTVFALWMVPELLPAFVLKGGEVSRYVIGGADLMFPGIHIPAEGLPSFLSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDVVYGDPVLASSSQTDDSCEGTETAADASNYGQNDSSNKEVGGSVDETTSDVLDEPGVVLTAQTDSTTDDIVSSVNDLKVVNDISTEEPNVPHTLSADDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLIIVKEDKHKKETVLYSVNRKHPDYTSFKPEKQQVEKIDQSDNHGPKESLSNKMLEVAEIYKPSVHVNPIFFAVGADTSKLYTAAEATDIVFQYIEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGYEVVVQGGVIDDLARHLIEQYGIPKKYIEVLDKTRK 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11563136 11573634 - ClCG11G008340.2 Cla11g00797 284619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00797 694 MobiDBLite consensus disorder prediction 284 319 - -
Cla11g00797 694 Gene3D - 80 266 - -
Cla11g00797 694 SUPERFAMILY SWIB/MDM2 domain 490 589 IPR036885 -
Cla11g00797 694 SUPERFAMILY PUA domain-like 184 260 IPR015947 -
Cla11g00797 694 MobiDBLite consensus disorder prediction 463 487 - -
Cla11g00797 694 SUPERFAMILY eIF1-like 572 690 IPR036877 GO:0003743|GO:0006413
Cla11g00797 694 MobiDBLite consensus disorder prediction 284 330 - -
Cla11g00797 694 CDD eIF2D_N 90 162 - -
Cla11g00797 694 ProSiteProfiles PUA domain profile. 174 255 - -
Cla11g00797 694 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 82 694 IPR039757 GO:0001731|GO:0003743
Cla11g00797 694 Pfam Translation initiation factor SUI1 605 682 IPR001950 GO:0003743|GO:0006413
Cla11g00797 694 Gene3D - 603 689 - -
Cla11g00797 694 Pfam Pre-PUA-like domain 83 171 IPR041366 -
Cla11g00797 694 ProSiteProfiles Translation initiation factor SUI1 family profile. 607 679 IPR001950 GO:0003743|GO:0006413
Cla11g00797 694 MobiDBLite consensus disorder prediction 463 484 - -
Cla11g00797 694 CDD eIF2D_C 607 689 IPR039759 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00797 K15027 EIF2D; translation initiation factor 2D - csv:101219792 1135.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00797 Cla_Chr11 FPKM 0.0 0.247002 4.435077 3.312421 15.59866 13.201022 14.172811 0.401836 0.530055 0.513233