Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00799 | ATGGATTCAGTGGAGGCTATCGAGGAGTTGGCTCAGTTGTCGGACTCCATGCGGCAAGCTGCCGCTTTGCTTGCCGACGAGGACATTGATGAAACCTCCACCTCCGGAGCTTCCTCTCGCAGGCCTTCCACTTTCCTCAACGTCGTTGCCTTGGGGAATGTGGGAGCTGGTAAATCTGCAGTTTTAAATAGCTTGATTGGACATCCTGTTTTGCCAACTGGGGAAAATGGTGCTACTAGGGCTCCCATAAGCATTGACTTACAAAGGGATGGCTCATTGAGCAGCAAATCAATTATCTTGCAAATTGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGACATTCTCTGCAGGACAGATTGAGTAAAGGTTCATCTGGCAAGAGCCGAGATGAAATCTATTTGAAGCTTCGCACTAGTACAGCGCCTCCGTTGAAATTGATTGATTTACCTGGGCTTGATCAGCGGAGCGTGAGTGAATCAATGATTAGTGAATATGCTGAGCACAATGATGCCATTTTACTAGTCATTGTGCCTGCCTCTCAAGCAGCTGAGATTGCTTCAAGTCGTGCCCTCAGACTGGTAAAGGATTATGACGGTGAAGGAACTAGAACTATTGGGATAATTAGCAAAATAGATCAAGCTGCTTCAGATCAGAAATCTCTGGCTGCTGTTCAGGCTTTATTATTAAATCAAGGACCATCAAGAGCTTCAGATATACCTTGGGTTGCTTTAATTGGTCAATCTGTTTCAATTGCTACTGCAGCGTCTGGTTCTGTTGGCTCTGAAAATTCTTTGGAAACTGCTTGGAGGGCCGAGAGCGAAAGTCTGAAATCCATACTGACTGGTGCCCCTCAGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTAGCTCATCAAATACGGAACCGTATGAAAGTCAGACTTCCAAACCTCTTATCAGGGTTACAAGGAAAGTCTCAGATTGTTCAAGATGAATTATCGAAACTTGGTGACCAAATGGGGGAAAGTGCTGAAGGGACAAGAGCTGTAGCCTTACAACTCTGCCGTGAATTTGAAGATAAGTTTCTTCAGCACATTGCAACTGGTGAGGGCGCTGGTTGGAAAATTGTTGCTAGTTTTGAGGGAAACTTTCCAAACAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAGAGGATTGTGTTAGAAGCCGATGGTTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATTAAAGGTGTTTTAGAGCTTGCAAAAGAACCATCTCGTCTATGTGTCGATGAGGCATCTGTTCATCTTTATGTAGTTCATCGCTTAGTTCATTCTGCTACTTACGGAGTTCTTGCTTGGCTGATAAAAAAGGTCCATCGCGTTCTAGTGGATATAGTTTCTGCCGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCACCTTTCAAGAGAGAGATCGTGGCTATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCACTTGTTGACATGGAGCGAGCTTTTGTGCCTCCTCAACATTTTATTCGATTGGTACAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAACATAAATCATCAAAGAAAGGTCAAGAGGCAGAGCAATCAATATTAAACAGGGCAACTAGTCCTCAAACCAGTGGTCAACAAAGTAGTGGAAGCCTGAAATCAATGAAGGATAAACCAGGCAAAGAGGACAAAGAAGTACAGGAAACTTCTGGTTTAAAGACTGCAGGTCCAGAAGGGGAAATAACAGCAGGCCGAATTCAAAATCTGAAGAATGGATTGGTGGATGTTGAAGGATTACATGGCTGGAATATTGGGAATGTGGTTCTTGGTGAAGGTTTTCTGTTAAAGAAAAGCGCCAAAACAAGTGGATGGAGTAAAAGATGGTTTGTTCTAAACGAGAAGACCGGAAAGGGTGTGGGTTATGCTTGTGGCTCTATCCCAAGTCTTAAGATGGCTTCCTGTATGCTATATCTAGTTCGTAATCTGGGCCTTATTATGAAAGGGAATCTGTGTACTTTTTGTGTAACTGTTGCTGATTATCTGTCTTTTCTTCATCTAATCTGTGCTAGAAGAATAGTTCTTACAAATTTTTCTTTCTTATGTCAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTCCGTGGTGTGATCACTTTGGAGGAATGTAATGTTGAGGAGGCTTCAGATGAGGAAGAAGCTCCTTCTAAGGGTTCAAAGGATAAGAAAGCTAATGGACCAGATTCTGGAAAAGGTCTCGTGTTCAAGATCACGAGCAAGGTTGCATATAAAACCGTTCTTAAAGCACACAACGCTGTTGTCTTGAAGGCTGAAAGTATGGCTGACAAGGTTGAATGGATGAATAAGATACGAAATGTTATTCAACCTTCCAGAGGGCAGATGAAGGGTCCAGAAAGTGGTCTTCCTATGCGGCAGAGTTTTTCAGATGGCTCTCTTGATACAATGAATAGAAAACCTGTCGATCCTGAAGAGGAACTACGATGGATGTCCCAAGAAGTTCGTGGCTATGTTGAAGCTGTCTTGAACAGTTTAGCTGCCAATGTTCCAAAAGCAGTTGTACTTTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTAAATCAGTTGTATAGTTCCATCAGTGCTCAAAGCACACCAAGGATAGAGGAGCTACTTCTCGAGGATCACAATGTAAAGAATAAGAGAGAGCGCTGCCAAAAACAATCATCTCTTCTTTCTAAATTACTGCGTCAACTCAGTGTACATGACAACCGAGCAGCTGCTGCAGCCAACTGGTCGGACAGTGGGGCAGAAAGCAGTCCGAAAATGAGTGCTCCAGCAGGTGAAGACTGGAAATCTGCATTTGATGCTGCAGCCAATGGTCCTGCGAACTACAATAGATCTTCATCCAATGGTCATAGTCGACGCTATAGTGATCCAGATCAAAATGGGGATTTGAACTCACGTTCAAGCTCCAACAGTCGCCGCACTCCAAACCGGATGCCTCCACCCCCACCACCATCTTCGGGTTCAAAATACTATTAG | 3126 | 43.73 | MDSVEAIEELAQLSDSMRQAAALLADEDIDETSTSGASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYAEHNDAILLVIVPASQAAEIASSRALRLVKDYDGEGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPSRASDIPWVALIGQSVSIATAASGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIRNRMKVRLPNLLSGLQGKSQIVQDELSKLGDQMGESAEGTRAVALQLCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEASVHLYVVHRLVHSATYGVLAWLIKKVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKHKSSKKGQEAEQSILNRATSPQTSGQQSSGSLKSMKDKPGKEDKEVQETSGLKTAGPEGEITAGRIQNLKNGLVDVEGLHGWNIGNVVLGEGFLLKKSAKTSGWSKRWFVLNEKTGKGVGYACGSIPSLKMASCMLYLVRNLGLIMKGNLCTFCVTVADYLSFLHLICARRIVLTNFSFLCQLGYTKKQEERHFRGVITLEECNVEEASDEEEAPSKGSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVVLKAESMADKVEWMNKIRNVIQPSRGQMKGPESGLPMRQSFSDGSLDTMNRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERCQKQSSLLSKLLRQLSVHDNRAAAAANWSDSGAESSPKMSAPAGEDWKSAFDAAANGPANYNRSSSNGHSRRYSDPDQNGDLNSRSSSNSRRTPNRMPPPPPPSSGSKYY | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 11724972 | 11738052 | + | ClCG11G008360.2 | Cla11g00799 | 284621 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00799 | 1041 | ProSiteProfiles | PH domain profile. | 635 | 823 | IPR001849 | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 542 | 607 | - | - | |
| Cla11g00799 | 1041 | Gene3D | - | 44 | 327 | IPR027417 | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 756 | 775 | - | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 957 | 1041 | - | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 989 | 1024 | - | - | |
| Cla11g00799 | 1041 | Pfam | Dynamin GTPase effector domain | 859 | 943 | IPR003130 | GO:0003924|GO:0005525 | |
| Cla11g00799 | 1041 | Gene3D | Dynamin, middle domain | 338 | 567 | - | - | |
| Cla11g00799 | 1041 | Pfam | Dynamin family | 48 | 212 | IPR045063 | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 557 | 582 | - | - | |
| Cla11g00799 | 1041 | ProSiteProfiles | Dynamin-type guanine nucleotide-binding (G) domain profile. | 42 | 312 | IPR030381 | GO:0005525 | |
| Cla11g00799 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 42 | 321 | IPR027417 | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 758 | 775 | - | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 1025 | 1041 | - | - | |
| Cla11g00799 | 1041 | SMART | PH_update | 636 | 825 | IPR001849 | - | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN-2A | 723 | 972 | - | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 542 | 556 | - | - | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN | 723 | 972 | IPR022812 | - | |
| Cla11g00799 | 1041 | ProSiteProfiles | GED domain profile. | 861 | 954 | IPR020850 | - | |
| Cla11g00799 | 1041 | SMART | dynamin_3 | 7 | 254 | IPR001401 | GO:0003924|GO:0005525 | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN-2A | 465 | 605 | - | - | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN-2A | 9 | 455 | - | - | |
| Cla11g00799 | 1041 | SMART | GED_2 | 856 | 949 | IPR003130 | GO:0003924|GO:0005525 | |
| Cla11g00799 | 1041 | CDD | DLP_1 | 48 | 312 | IPR001401 | GO:0003924|GO:0005525 | |
| Cla11g00799 | 1041 | Gene3D | - | 633 | 827 | IPR011993 | - | |
| Cla11g00799 | 1041 | MobiDBLite | consensus disorder prediction | 583 | 597 | - | - | |
| Cla11g00799 | 1041 | Pfam | Dynamin central region | 265 | 529 | IPR000375 | - | |
| Cla11g00799 | 1041 | ProSitePatterns | Dynamin-type guanine nucleotide-binding (G) domain signature. | 71 | 80 | IPR019762 | - | |
| Cla11g00799 | 1041 | SUPERFAMILY | PH domain-like | 632 | 829 | - | - | |
| Cla11g00799 | 1041 | PRINTS | Dynamin signature | 70 | 87 | IPR022812 | - | |
| Cla11g00799 | 1041 | PRINTS | Dynamin signature | 182 | 200 | IPR022812 | - | |
| Cla11g00799 | 1041 | PRINTS | Dynamin signature | 201 | 217 | IPR022812 | - | |
| Cla11g00799 | 1041 | PRINTS | Dynamin signature | 45 | 63 | IPR022812 | - | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN | 465 | 605 | IPR022812 | - | |
| Cla11g00799 | 1041 | PANTHER | DYNAMIN | 9 | 455 | IPR022812 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00799 | K01528 | DNM1_3; dynamin 1/3 [EC:3.6.5.5] | - | csv:101220030 | 1073.15 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla08g00152 | Cla11g00799 | CCT | |
| Cla08g00152 | Cla11g00799 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00294 | Cla-Chr5:2702304 | Cla11g00799 | Cla-Chr11:11724972 | 1.44E-08 | dispersed | |
| Cla11g00799 | Cla-Chr11:11724972 | Cla06g00113 | Cla-Chr6:1202637 | 3.79E-19 | dispersed | |
| Cla11g00799 | Cla-Chr11:11724972 | Cla08g00152 | Cla-Chr8:2948058 | 4.56E-153 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1716 | Blo01g01682 | Blo12g00812 | . | Bda03g00360 | Bpe02g00260 | Bpe04g00320 | Bma04g00337 | Bma01g02448 | . | . | Cma01g00877 | Cma09g01291 | Car01g00802 | . | Sed03g0698 | Cpe06g00975 | . | Bhi04g02550 | Tan11g0043 | Cmetu03g0129 | . | Hepe02g3468 | . | Lcy10g2361 | Cla08g00152 | Cam08g0148 | Cec08g0103 | Cco08g0213 | . | Cmu08g0149 | Cre08g0132 | Cone4ag1154 | . | . | . | . | . | . | Cme09g00107 | . | . | Bda11g00922 | . | . | . | . | . | Sed11g1774 | Cmo01g00920 | Cmo09g01249 | . | . | . | Car09g01106 | . | Cpe02g00986 | Bhi06g00143 | Tan10g1858 | Cmetu09g1009 | . | . | . | . | Cla11g00799 | Cam11g0836 | Cec11g0820 | Cco11g0822 | Clacu11g1022 | Cmu11g0885 | Cre11g1279 | Lsi08g00154 | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001593 | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 4 | 2 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 4 | 3 | 2 | 69 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cla11g00799 | Cla_Chr11 | FPKM | 357.578125 | 396.076263 | 420.166534 | 417.941589 | 104.88427 | 121.183861 | 102.055946 | 345.687103 | 343.122498 | 317.896179 |