Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00803 ATGTTGAGTTTCAACGGTCAACAACTGTGGCCGACGCACTACCTTCAGCTTAACGAAATGCGCACCTTCGCTTCTTTTATTTCCCCAATTCCCACTTTCACTCTCATCATCCATTCCTTAATCATGAACCCTTCTCTTTTCTTCCTTCCTTTTTCCCTTCTCTTCTTCATCTTCAACCTCGCCTCCGCCTGTAATCTCGCCGATCAGAACGCTCTTCTTGCTTTCAAATCCGCCATTACTGCCGACCCCTCCGGCATTTTAACCTCATGGAAATCCGGCGTCGACTGCTGCACTTGGGCCGGAGTCACTTGCTCCGTCCCCAATCGCGTCACCAGTCTCAGCCTCTACGGCCAACTCGACCGCTCCAACGCCTTCCTCTCCGGCACCATCTCCGCCTCTCTCTCCAACCTCCCTTACTTGGACGGAATCTACCTCGTCAATCTTCGAAACATTTCAGGCCCTTTTCCAACTTCACTCTTCAAACTCCCCAAACTCCTCTTCGTCTACATCGAGAACAACAAGCTTTCAGGTCAATTACCCGCCGCCATCGGAAATATGAGCCAACTAGAAGCACTCAGTCTTGAAGGTAACAGATTCACTGGTCCGATCCCGAGTTCAATTTCCAAATTGACTCGCCTGACTCAGCTTAAACTCGGTAGCAATCTTCTCACTGGATCCATTCCGATTGGAATCCAGCAACTCAAAAGTCTGACGTTCCTCAGCCTCGAACGGAATCGATTCACCGGTCCCGTTCCGGATTTTTGGGGATCATTTCCGGAGTTGAGGATTCTCAGACTTTCTCACAATAAACTCACCGGGAAAATTCCGCGCTCAATTTCAGCTCTGGCTCCGAAGCTTAATTACTTGGAGTTGGGGCACAATTTGATAACAGGTAATATCCCTGAATTTCTCGGAAATTTTAGGGCTCTTGATACTCTCGATCTCTCCTCCAATTTCATCTCTGGAGTTGTGCCGAAGAGCTTCAGGAATTTGACGAAGATATTCAACCTGGATCTATCACGGAATTCACTGGTGGATCCGTTCCCGGAGTTGTTGGTGAAAGGGATCGAGTCGCTGGATTTGTCGTACAACAAATTTCATCTCGGGAAAATTCCGAAATGGGTGACGTCGTCGCCGATAATATACTCTCTGAAATTGGCCAAATGCGGGATCAAGATGAAGCTGGACGATTGGAAGCCGAGCGAAACGTATTTCTACGATTACATTGATTTATCGGAGAACGAGATTTGGGGCAGTCCGGTGAATTTGTTGAACCGGACGGATTATTTGGTCGGATTTTGGGGAGCCGGAAACAAGTTGAATTTCAAGCTGCAAGATTTGAGGATAGTGAAGAGGTTGAAGTATTTGGATTTGTCGAGAAATTTGGTGTCCGGTAAAGTACCCGGCGGCGTGGTGGGGCTGGAAAAGTTGAACGTCAGCTACAATCATTTGTGCGGCCGGCTTCCAGCGACGAAGTTTCCGGCGGCGTCGTTTTTGGGAAATGATTGCTTGTGTGGGGCGCCGCTGCCGTCCTGCAAATGA 1542 48.64 MLSFNGQQLWPTHYLQLNEMRTFASFISPIPTFTLIIHSLIMNPSLFFLPFSLLFFIFNLASACNLADQNALLAFKSAITADPSGILTSWKSGVDCCTWAGVTCSVPNRVTSLSLYGQLDRSNAFLSGTISASLSNLPYLDGIYLVNLRNISGPFPTSLFKLPKLLFVYIENNKLSGQLPAAIGNMSQLEALSLEGNRFTGPIPSSISKLTRLTQLKLGSNLLTGSIPIGIQQLKSLTFLSLERNRFTGPVPDFWGSFPELRILRLSHNKLTGKIPRSISALAPKLNYLELGHNLITGNIPEFLGNFRALDTLDLSSNFISGVVPKSFRNLTKIFNLDLSRNSLVDPFPELLVKGIESLDLSYNKFHLGKIPKWVTSSPIIYSLKLAKCGIKMKLDDWKPSETYFYDYIDLSENEIWGSPVNLLNRTDYLVGFWGAGNKLNFKLQDLRIVKRLKYLDLSRNLVSGKVPGGVVGLEKLNVSYNHLCGRLPATKFPAASFLGNDCLCGAPLPSCK 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11838160 11844911 + ClCG11G008390.2 Cla11g00803 284625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00803 513 Pfam Leucine rich repeat N-terminal domain 67 105 IPR013210 -
Cla11g00803 513 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 52 512 IPR045273 -
Cla11g00803 513 Gene3D Ribonuclease Inhibitor 66 230 IPR032675 -
Cla11g00803 513 Gene3D Ribonuclease Inhibitor 235 513 IPR032675 -
Cla11g00803 513 Pfam Leucine rich repeat 284 344 IPR001611 GO:0005515
Cla11g00803 513 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Cla11g00803 513 SUPERFAMILY L domain-like 94 468 - -
Cla11g00803 513 SMART LRR_typ_2 162 186 IPR003591 -
Cla11g00803 513 SMART LRR_typ_2 471 500 IPR003591 -
Cla11g00803 513 SMART LRR_typ_2 258 282 IPR003591 -
Cla11g00803 513 SMART LRR_typ_2 210 233 IPR003591 -
Cla11g00803 513 SMART LRR_typ_2 234 256 IPR003591 -
Cla11g00803 513 SMART LRR_typ_2 307 330 IPR003591 -
Cla11g00803 513 Pfam Leucine Rich Repeat 261 282 IPR001611 GO:0005515
Cla11g00803 513 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 52 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00803 - - - csv:101221133 857.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01189 Cla-Chr10:26503713 Cla11g00803 Cla-Chr11:11838160 1.29E-12 dispersed
Cla11g00803 Cla-Chr11:11838160 Cla11g01248 Cla-Chr11:25986307 7.65E-16 dispersed
Cla11g00803 Cla-Chr11:11838160 Cla07g00487 Cla-Chr7:6924354 2.68E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00803 Cla_Chr11 FPKM 1.134328 1.518054 0.77833 0.912763 1.280077 1.018125 1.300192 1.465909 2.279833 2.055007