Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00805 ATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCATCGTGTGGAGCGTATTGAGTCTTGTCTACGTGATTCCAATGACGATGTTCGCATTTTAGGCATTTGGGGAATGGGCGGCATTGGTAAAACTACAGTTGCCACAGCTTTGTTTCATAAAATAAAATATGAATTTGATGGTTATTGCTTTCTTGAGAACGTTAGGGAAAGTTCTGGTAGAAATGGACAGGGACTACCAAATTTACGAAATATGCTTCTATCTCAAGTTATGCAGGAACAACAACACCTTTCAATGTATATTTCACGAGCTTTCCTTAAAAATAGGTTGAGTGGAAAGAAGGTGCTCATTGTTCTTTATGATATTGATGACATAGAACAATTAGAGAATTTAGTTGGAGGACGCAATTGGTTTGGAGTAGGAAGTAGAGTTGTCATAACAACTAGAAACAGACAACTTCTTACTGATCAGGTAGATGAAGTTTATGGCTATGCAAAGGATCAGTTGTCTGATGAGGATGGTTTGCTTCTCTTTAGCCGCTATGCGTTTAGAACAAGCCAACCGCCAGAGGATTACCTTGAGCTTTCTAGAAAGGTTATGCATTATGCATCCGGCATTCCCTTAGCTCTCAAGCTCTTAGGTTCTTATCTACGTAAAAAGGACGAAAGAACGTGGAAAAGTGCATTGGCTAGACTAGAAAGATTTTCCGACGATGAAATATATGGGAAAGTTCTAGAACTAAGCTTTGAAGGACTTAATTCGAAGGAGAAAGACATTCTACTTGATGTAGCATGTTTCTTCAAGGGAGAGGATGTTGAACTTGCCAGTTTAGTATGGGAAGCTTGTGGCTTTTTGTCGCACGATGCTATTTCTGTACTTAGTGACAAGTGTCTTATATCGATGCAAAATAATAACTCTCGACTCTGGATGCATGATTTGATTCAAGAGATGTGGAAAGCAATTGTTCGGAAAGAGAGCGTTGAACCAGGTGAGGAAGCTTTTGTGAAAATGGAGAAATTGATATTGTTGAAGTTCTTCTCCAGACAACTAGATGAAATCAGCACCAACAGAAGTCTTCCTCGTGGTTTAACAATGCTTCCAAACAGCTTGACATATCTTTCTTGGGATCACTATCCGAACAAGTTTCTTGCTTCAAAATTTCATCCACTGAATCTTGTTGGGTTGTTTTTACGCCAGAGTTGTCAGACAACTGTGGAAAGGACACAGGGAGCTCAGTATCTTGAGCATATTGATTCACACGGCTGCACAGAATTATCTAAAATCCACTCTTCTGTCAGTACTCTAAGCAAACTCACTTATCTGAATCTAAGTGGTTGTAGGAAGCTACGAAATCTTGCGAGCAACATTTGTATGGAACGTCTCGAAAGGCTTGTTCTCCATGGTTGTGAAAACCTCCAAAACTTTCCAGACATTTCTGGTAATATGGAACATTTGTATGAATTTTCCCTACATGGAACTGGTGTGTCAAATCTGCCTTCATTCATTGAAAGTCTGACTGGTCTTAGTAAGCTTAAACTTTCAAACTGCAAAAAACTCGTGGGTCTTCCAAATAGCATCTGTAATTTGAAACGTCTCGAAAAACTTTTTCTCTCTGGTTGTGAAAACCTCCAACATCTTCCGGAGAACATTGGGAATCTAGAATCGTTATCAGAGTTTTATGTAGATGGAACTTCAATTAAACACGTCCCATCCTCCATTATCTATTTGAAGAATATTTCAAGATTGTCATTTGGTGGGTGTATAGGAATAATAAAGACATCATCTTCCCAATCCCATTGGTTGTCTAGGTTAGTTCCTAGAAGTAGAAGCAGCAGTAGTCCAAGTTGTATGGGTGGTTTGCAGTTGCCTCCTTTGGGGGGCTTTCAAAATCTTACTAGTCTTTGTCTTAGTAACTGCAATCTTGTGGAAGCGCCGAGTGGTCTACACAACTTGCCCTCCTTGAGTGAACTTGACTTGAGTGGAAATAACTTTGAGACCTTACCTCAAACCATATTCTACAATCTTTCTAGTTTATCTACTCTAGAGTTGAGTTATTGCACGAGGCTACGATCATTACCGGACCTTCCACCCAGCCTCCATACTTTGCTGGCAGATGAATGCACATCCCCGGAATCAATCATGAGCCTTAAATCTTTGTTCGGAGGAACTGAAAGAGAAGGGCAGGAGTTATATGATCTGGGTATTTATCATGGTGGCCTAGGGCTTAAGGTGGGGGCGATGTACCCAGGGAGTGAAATTCCAGAATGGTTTAGTAATAATCAAACAGAGGGCAATACTGTAGCCCTCCAGCTTCCTCGACATTGTATAAATAATTCTTTGGCGTTTGCTCTTTGTCTTATTGTTTCTCAGGGTGAGGGTGACATGGCCTTTCATTCTGATGTCAGTGTTCACTTTCGATTGACATTTCGACACGATAGTGAGAATATCGACCGAAGCGGTTTCCATTTCTTGTGTGGAAGACAGAGCGGGGTGTCTTTTAAAGAAGATATTGTTGTTTTTGAACTTGTATCCATTAGTCGATACATTGTTGCAGGTGGAATGATGAACCTTGGCCCAAGTATTGCAATCACATTGAATGTTTCTTTAGGTTCGGTGGGTATTTCGACATCGGCCGTGCCCCTGTAA 2847 40.43 MAESLSSSSFQPISTPINNIAVQYDVFVSFRGEDVRNNFVSHLQAAFERKGTATFFDEELKRGQQIAPALLKAIHNNLPFHHRVERIESCLRDSNDDVRILGIWGMGGIGKTTVATALFHKIKYEFDGYCFLENVRESSGRNGQGLPNLRNMLLSQVMQEQQHLSMYISRAFLKNRLSGKKVLIVLYDIDDIEQLENLVGGRNWFGVGSRVVITTRNRQLLTDQVDEVYGYAKDQLSDEDGLLLFSRYAFRTSQPPEDYLELSRKVMHYASGIPLALKLLGSYLRKKDERTWKSALARLERFSDDEIYGKVLELSFEGLNSKEKDILLDVACFFKGEDVELASLVWEACGFLSHDAISVLSDKCLISMQNNNSRLWMHDLIQEMWKAIVRKESVEPGEEAFVKMEKLILLKFFSRQLDEISTNRSLPRGLTMLPNSLTYLSWDHYPNKFLASKFHPLNLVGLFLRQSCQTTVERTQGAQYLEHIDSHGCTELSKIHSSVSTLSKLTYLNLSGCRKLRNLASNICMERLERLVLHGCENLQNFPDISGNMEHLYEFSLHGTGVSNLPSFIESLTGLSKLKLSNCKKLVGLPNSICNLKRLEKLFLSGCENLQHLPENIGNLESLSEFYVDGTSIKHVPSSIIYLKNISRLSFGGCIGIIKTSSSQSHWLSRLVPRSRSSSSPSCMGGLQLPPLGGFQNLTSLCLSNCNLVEAPSGLHNLPSLSELDLSGNNFETLPQTIFYNLSSLSTLELSYCTRLRSLPDLPPSLHTLLADECTSPESIMSLKSLFGGTEREGQELYDLGIYHGGLGLKVGAMYPGSEIPEWFSNNQTEGNTVALQLPRHCINNSLAFALCLIVSQGEGDMAFHSDVSVHFRLTFRHDSENIDRSGFHFLCGRQSGVSFKEDIVVFELVSISRYIVAGGMMNLGPSIAITLNVSLGSVGISTSAVPL 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11878659 11884531 - ClCG11G008400.2 Cla11g00805 284627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00805 948 Pfam C-JID domain 815 865 IPR045344 -
Cla11g00805 948 Gene3D Ribonuclease Inhibitor 542 670 IPR032675 -
Cla11g00805 948 Gene3D Ribonuclease Inhibitor 671 788 IPR032675 -
Cla11g00805 948 SUPERFAMILY L domain-like 376 767 - -
Cla11g00805 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 329 IPR027417 -
Cla11g00805 948 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 492 590 - -
Cla11g00805 948 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 76 IPR035897 -
Cla11g00805 948 SMART LRR_typ_2 695 717 IPR003591 -
Cla11g00805 948 SMART LRR_typ_2 718 741 IPR003591 -
Cla11g00805 948 SMART LRR_typ_2 596 620 IPR003591 -
Cla11g00805 948 SMART LRR_typ_2 502 526 IPR003591 -
Cla11g00805 948 Gene3D - 21 73 IPR035897 -
Cla11g00805 948 PRINTS Disease resistance protein signature 100 115 - -
Cla11g00805 948 PRINTS Disease resistance protein signature 270 284 - -
Cla11g00805 948 PRINTS Disease resistance protein signature 740 756 - -
Cla11g00805 948 PRINTS Disease resistance protein signature 176 190 - -
Cla11g00805 948 Gene3D - 74 228 IPR027417 -
Cla11g00805 948 Gene3D - 235 320 IPR042197 -
Cla11g00805 948 Gene3D Ribonuclease Inhibitor 390 541 IPR032675 -
Cla11g00805 948 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 82 393 - -
Cla11g00805 948 Pfam TIR domain 23 76 IPR000157 GO:0007165
Cla11g00805 948 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 529 657 - -
Cla11g00805 948 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 75 - -
Cla11g00805 948 Pfam NB-ARC domain 83 302 IPR002182 GO:0043531
Cla11g00805 948 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 401 468 - -
Cla11g00805 948 Pfam Leucine rich repeat 697 753 IPR001611 GO:0005515
Cla11g00805 948 ProSiteProfiles TIR domain profile. 22 153 IPR000157 GO:0007165
Cla11g00805 948 ProSiteProfiles Leucine-rich repeat profile. 720 741 IPR001611 GO:0005515
Cla11g00805 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 492 590 IPR044974 GO:0006952
Cla11g00805 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 529 657 IPR044974 GO:0006952
Cla11g00805 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 75 IPR044974 GO:0006952
Cla11g00805 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 401 468 IPR044974 GO:0006952
Cla11g00805 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 82 393 IPR044974 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00805 - - - mcha:111020196 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00805 Cla-Chr11:11878659 Cla08g00136 Cla-Chr8:2646747 1.36E-115 dispersed
Cla01g00427 Cla-Chr1:4649806 Cla11g00805 Cla-Chr11:11878659 9.46E-08 transposed
Cla11g00805 Cla-Chr11:11878659 Cla08g00128 Cla-Chr8:2531359 1.45E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00805 Cam11g0842 Cec11g0828 . Clacu11g1015 Cmu11g0878 Cre11g1288 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00805 Cla_Chr11 FPKM 4.059791 4.646861 8.67504 6.631646 7.221729 8.915026 6.775545 0.106739 0.059429 0.238262