Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00844 ATGGGTAATCCCATTGAGGTTTACGGTGTCGCGGTTGTTGTTGTGGGGATGGTGTTGTTTGATGTAAGTGTTGCCCAATTTGAAGGAGGTGGAAACAGTCCATTCAGAGATGGCGACGGCAGCGGCAGGAGACAGGTGGAGATGGTACCGGCTATGTTTGTATTCGGAGACTCTCTCATTGACAATGGAAATAACAATAATCTTCCCTCTTTTGCCAAGGCCAACTATTTCCCCTATGGCATTGATTTCAATGGCGGCCCAACTGGGCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTAGGACTCCCATTAATCCCAGCCTTCTCTCAAGTTTCTGGACCCCAATCTCTGCATGGAGTCAACTATGCATCTGCTGCGGCCGGGATTCTTGACGCTACGGGGAGAAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTGGATGAGATTAGTAACAATGTAGGGGCAGGGAAGGTGGGAGAATCCATCGGACGGTGCATATTCTTTGTGGGAATGGGAAGCAACGACTACCTCAATAACTATCTTATGCCAAATTACCCCACTCGAAATCAGTACAATGCTGAACAGTACGCGGACTTGTTGGTCAGCCAATATACGGAGCAGCTCACTAGGCTGTACAATCTAGGAGGTAGAAGGTTTGCGATAGCAGGTTTAGGGCTGATGGGTTGCATTCCAAGCATCCTAGCACAGAGCCCATCAGGAAGGTGCTCAGAAGAAGTGAACCAACTTGTTGGACCATTCAATATAAATGTGAAGAGAATGATAAAGCAGCTGAATACCAATCTTCCAGGAGCAAGATATAGTTACATTGACATAGAACACATGTTCCAAGACTTGCTTCTCAATTCTAGATTTTATGGTTTAAGTGTTTTGAATAGAGGATGCTGTGGAATTGGGAGGAACAGAGGCCAAATCACTTGCCTTCCCTTCCAAACTCCTTGTAGTAATCGAGATGAGTACATCTTTTGGGATGCATTCCATCCTACTGAAGCAGTTAACATTATCATGGCTAGGAAGGCTTTTAATGGTGACCAATCTGTTATTTTCCCTTTCAATATCCAACAGCTAGCTACTTCTCTTTGA 1140 45.35 MGNPIEVYGVAVVVVGMVLFDVSVAQFEGGGNSPFRDGDGSGRRQVEMVPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAFSQVSGPQSLHGVNYASAAAGILDATGRNFVSRIPFNQQIRNFENTLDEISNNVGAGKVGESIGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAEQYADLLVSQYTEQLTRLYNLGGRRFAIAGLGLMGCIPSILAQSPSGRCSEEVNQLVGPFNINVKRMIKQLNTNLPGARYSYIDIEHMFQDLLLNSRFYGLSVLNRGCCGIGRNRGQITCLPFQTPCSNRDEYIFWDAFHPTEAVNIIMARKAFNGDQSVIFPFNIQQLATSL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12963403 12964798 + ClCG11G008800.1 Cla11g00844 284666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00844 379 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 18 377 - -
Cla11g00844 379 Pfam GDSL-like Lipase/Acylhydrolase 53 358 IPR001087 GO:0016788
Cla11g00844 379 Gene3D SGNH hydrolase 43 364 IPR036514 -
Cla11g00844 379 CDD SGNH_plant_lipase_like 50 363 IPR035669 -
Cla11g00844 379 PANTHER OS05G0419800 PROTEIN 18 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00844 - - - csv:101203225 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00391 Cla-Chr3:4468561 Cla11g00844 Cla-Chr11:12963403 3.91E-115 dispersed
Cla07g01093 Cla-Chr7:27629710 Cla11g00844 Cla-Chr11:12963403 3.30E-75 dispersed
Cla07g01365 Cla-Chr7:30778356 Cla11g00844 Cla-Chr11:12963403 1.93E-32 dispersed
Cla10g00493 Cla-Chr10:6496208 Cla11g00844 Cla-Chr11:12963403 1.27E-59 dispersed
Cla02g01294 Cla-Chr2:26932441 Cla11g00844 Cla-Chr11:12963403 3.88E-83 transposed
Cla05g01213 Cla-Chr5:13615799 Cla11g00844 Cla-Chr11:12963403 1.38E-89 transposed
Cla06g01589 Cla-Chr6:29423673 Cla11g00844 Cla-Chr11:12963403 6.10E-73 transposed
Cla11g00844 Cla-Chr11:12963403 Cla11g00993 Cla-Chr11:19047305 7.10E-74 wgd
Cla11g00844 Cla-Chr11:12963403 Cla08g00059 Cla-Chr8:1422069 8.36E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00844 Cla_Chr11 FPKM 7.995256 6.94696 9.819937 11.508004 7.262623 8.203956 8.276322 8.365911 6.815814 8.297654