Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00847 ATGAAATTCGGTGTGAAGGCATGGAGCAACGGCAAGGCGCGCACCGGATTTCTTCAGCTCGGCAACTGCCCTACCGCCATTGAAACTCCCGCCTTGCTTCTCTCTACTCGCAAAGGACTGCCTAATTTCATCTCTCCTGATCTTCTTCCCTCTCTCCCTTCCCCTGATTCTCACCTCCTCCAGTTCAGTCCTCTTCACTTCTTGGAAGGTCCTTCATCGAGAACAATATCAAGTATTGGAGGGATCCAGCATTTACTTGGCTTACATGAATATGGATTTGCAGCAGTACCAAGGGATTCTGTTCAGTGTCTTCCAGAATGTGATGCTACAAATAAATTTGGAGCATCTTTTGAGACTACCTGCGGTCGTCGTTTGATTAGACCTGTTGAGTACATTGAAATGATTTCGTCCATGAAACCAGACATTTGGGCATCCTTGGCTGATGAAGTGCCATCGTGGGTTTCAGATAAAAGGAATAGAACATCAGTGGATCGAACTGTGAAATGGCTGGATGAATGCCTCACTTTGAACTCAACAGGTGGGGGTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGCAAAAGATGTGCTGTGGAGGTGGTTAAGCGTAATGTATCAGGTTACTGGATTGGAGGTTTTGGGTCTGGAGAGAGCATGGATGAGCGTCCTGCTCTTCTTGATGCTGTTACGGATGTTTTACCAGAAGAAATGCCACGTATGATCTGTGGGCTTGGACTTCCAGAGGAGATCTTGCAGGGCATTGCTGCGGGAGTCGATCTCTTTGACTCAGCGTACATATATCATTTAACCCTTGGAGGCTTTGCTCTCACCTTCCCCCTTTATGGAATTGTGGAGAAACAGCCTGCCGCACACCTGAAAGACAATGCAAGTGATATGACAAAGATCAACTTAAGAGCAACACTTTATCGGAAAGATACTTCACCAATTCTTGAGGGTTGTAATTGCTATACATGCCTGAATCATACGAAGGCTTATATAAATCACTTACTAAATGTCCATGAAATGCTGGCTCAGATACTGCTGGAGTTACATAATACTCATCACTATTTAGGATTCTTTCGATCAATCCGAGAAGCAATCGAGGCAGGCAAATTTCAGCAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCATTGCCAACGTCAGCACTCAGCTGTTGA 1200 45.0 MKFGVKAWSNGKARTGFLQLGNCPTAIETPALLLSTRKGLPNFISPDLLPSLPSPDSHLLQFSPLHFLEGPSSRTISSIGGIQHLLGLHEYGFAAVPRDSVQCLPECDATNKFGASFETTCGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNRTSVDRTVKWLDECLTLNSTGGGVFGAIVGGNDVEERKRCAVEVVKRNVSGYWIGGFGSGESMDERPALLDAVTDVLPEEMPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLYGIVEKQPAAHLKDNASDMTKINLRATLYRKDTSPILEGCNCYTCLNHTKAYINHLLNVHEMLAQILLELHNTHHYLGFFRSIREAIEAGKFQQFHQKFVEVRRNHLALPTSALSC 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13021658 13026769 + ClCG11G008830.1 Cla11g00847 284669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00847 399 Hamap Queuine tRNA-ribosyltransferase accessory subunit 2 [QTRT2]. 25 381 IPR028592 GO:0006400|GO:0008479
Cla11g00847 399 Gene3D - 1 387 IPR036511 GO:0006400|GO:0016763
Cla11g00847 399 SUPERFAMILY tRNA-guanine transglycosylase 1 385 IPR036511 GO:0006400|GO:0016763
Cla11g00847 399 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 125 386 IPR002616 GO:0006400|GO:0016763
Cla11g00847 399 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 1 390 - -
Cla11g00847 399 Pfam Queuine tRNA-ribosyltransferase 12 386 IPR002616 GO:0006400|GO:0016763
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00847 K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit - csv:101223024 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00847 Cla-Chr11:13021658 Cla11g01400 Cla-Chr11:27536301 1.32E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00847 Cam11g0877 Cec11g0878 Cco11g0873 Clacu11g0985 Cmu11g0836 Cre11g1321 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009870 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00847 Cla_Chr11 FPKM 1.914062 3.830859 0.240097 0.451734 1.156771 1.466154 3.01217 0.0 0.0 0.0