Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00869 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAATTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1707 43.7 MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13793838 13851971 - ClCG11G009060.2 Cla11g00869 284691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00869 568 CDD RING-HC_RBR_TRIAD1_like 145 195 - -
Cla11g00869 568 Gene3D - 260 500 - -
Cla11g00869 568 SMART zf_4 543 567 IPR001876 -
Cla11g00869 568 SUPERFAMILY Ran binding protein zinc finger-like 541 568 IPR036443 -
Cla11g00869 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Cla11g00869 568 MobiDBLite consensus disorder prediction 512 537 - -
Cla11g00869 568 Gene3D - 540 568 - -
Cla11g00869 568 MobiDBLite consensus disorder prediction 1 55 - -
Cla11g00869 568 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 516 - -
Cla11g00869 568 SUPERFAMILY RING/U-box 283 315 - -
Cla11g00869 568 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Cla11g00869 568 MobiDBLite consensus disorder prediction 1 58 - -
Cla11g00869 568 ProSiteProfiles TRIAD supradomain profile. 141 364 IPR044066 -
Cla11g00869 568 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 516 IPR031127 GO:0004842|GO:0016567
Cla11g00869 568 SUPERFAMILY RING/U-box 142 223 - -
Cla11g00869 568 ProSitePatterns Zinc finger RanBP2-type signature. 545 564 IPR001876 -
Cla11g00869 568 SMART ibrneu5 214 264 IPR002867 -
Cla11g00869 568 Pfam Ariadne domain 335 498 IPR045840 -
Cla11g00869 568 ProSiteProfiles Zinc finger RanBP2 type profile. 541 568 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00869 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00460 Cla-Chr8:13941413 Cla11g00869 Cla-Chr11:13793838 0 dispersed
Cla09g01748 Cla-Chr9:34837996 Cla11g00869 Cla-Chr11:13793838 1.01E-45 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01748 . 149 574 ARIADNE family AT4G34370 72.4 8.3e-184 640.2
Cla09g01748 . 43 527 ARIADNE family AT2G16090 77.4 3.8e-225 777.7
Cla09g01748 . 23 528 ARIADNE family AT3G27710 62.0 4.6e-184 641.3
Cla09g01748 . 29 507 ARIADNE family AT3G27720 54.5 5.6e-144 508.1
Cla08g00460 . 61 559 ARIADNE family AT1G05890 69.7 4.0e-213 738.0
Cla11g00869 . 62 516 ARIADNE family AT1G05890 66.9 7.1e-194 674.1
Cla08g00460 . 59 619 ARIADNE family AT1G65430 68.1 2.3e-234 808.5
Cla11g00869 . 37 568 ARIADNE family AT1G65430 70.9 1.1e-233 806.2
Cla08g00460 . 60 484 ARIADNE family AT2G31780 54.3 4.9e-139 491.5
Cla11g00869 . 49 431 ARIADNE family AT2G31780 52.8 1.5e-127 453.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00869 Cla_Chr11 FPKM 50.825191 49.585728 34.168156 31.467922 8.596368 8.453911 7.649252 22.819437 24.871799 23.62071