Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla11g00869 | ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAATTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA | 1707 | 43.7 | MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13793838 | 13851971 | - | ClCG11G009060.2 | Cla11g00869 | 284691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla11g00869 | 568 | CDD | RING-HC_RBR_TRIAD1_like | 145 | 195 | - | - | |
Cla11g00869 | 568 | Gene3D | - | 260 | 500 | - | - | |
Cla11g00869 | 568 | SMART | zf_4 | 543 | 567 | IPR001876 | - | |
Cla11g00869 | 568 | SUPERFAMILY | Ran binding protein zinc finger-like | 541 | 568 | IPR036443 | - | |
Cla11g00869 | 568 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 224 | IPR013083 | - | |
Cla11g00869 | 568 | MobiDBLite | consensus disorder prediction | 512 | 537 | - | - | |
Cla11g00869 | 568 | Gene3D | - | 540 | 568 | - | - | |
Cla11g00869 | 568 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cla11g00869 | 568 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 29 | 516 | - | - | |
Cla11g00869 | 568 | SUPERFAMILY | RING/U-box | 283 | 315 | - | - | |
Cla11g00869 | 568 | ProSiteProfiles | Zinc finger RING-type profile. | 145 | 189 | IPR001841 | - | |
Cla11g00869 | 568 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cla11g00869 | 568 | ProSiteProfiles | TRIAD supradomain profile. | 141 | 364 | IPR044066 | - | |
Cla11g00869 | 568 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 29 | 516 | IPR031127 | GO:0004842|GO:0016567 | |
Cla11g00869 | 568 | SUPERFAMILY | RING/U-box | 142 | 223 | - | - | |
Cla11g00869 | 568 | ProSitePatterns | Zinc finger RanBP2-type signature. | 545 | 564 | IPR001876 | - | |
Cla11g00869 | 568 | SMART | ibrneu5 | 214 | 264 | IPR002867 | - | |
Cla11g00869 | 568 | Pfam | Ariadne domain | 335 | 498 | IPR045840 | - | |
Cla11g00869 | 568 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 541 | 568 | IPR001876 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g00460 | Cla-Chr8:13941413 | Cla11g00869 | Cla-Chr11:13793838 | 0 | dispersed | |
Cla09g01748 | Cla-Chr9:34837996 | Cla11g00869 | Cla-Chr11:13793838 | 1.01E-45 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla11g00869 | K11968 | - | csv:101218052 | 1076.62 |