Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00869 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAATTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1707 43.7 MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13793838 13851971 - ClCG11G009060.2 Cla11g00869 284691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00869 568 CDD RING-HC_RBR_TRIAD1_like 145 195 - -
Cla11g00869 568 Gene3D - 260 500 - -
Cla11g00869 568 SMART zf_4 543 567 IPR001876 -
Cla11g00869 568 SUPERFAMILY Ran binding protein zinc finger-like 541 568 IPR036443 -
Cla11g00869 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Cla11g00869 568 MobiDBLite consensus disorder prediction 512 537 - -
Cla11g00869 568 Gene3D - 540 568 - -
Cla11g00869 568 MobiDBLite consensus disorder prediction 1 55 - -
Cla11g00869 568 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 516 - -
Cla11g00869 568 SUPERFAMILY RING/U-box 283 315 - -
Cla11g00869 568 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Cla11g00869 568 MobiDBLite consensus disorder prediction 1 58 - -
Cla11g00869 568 ProSiteProfiles TRIAD supradomain profile. 141 364 IPR044066 -
Cla11g00869 568 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 516 IPR031127 GO:0004842|GO:0016567
Cla11g00869 568 SUPERFAMILY RING/U-box 142 223 - -
Cla11g00869 568 ProSitePatterns Zinc finger RanBP2-type signature. 545 564 IPR001876 -
Cla11g00869 568 SMART ibrneu5 214 264 IPR002867 -
Cla11g00869 568 Pfam Ariadne domain 335 498 IPR045840 -
Cla11g00869 568 ProSiteProfiles Zinc finger RanBP2 type profile. 541 568 IPR001876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00460 Cla-Chr8:13941413 Cla11g00869 Cla-Chr11:13793838 0 dispersed
Cla09g01748 Cla-Chr9:34837996 Cla11g00869 Cla-Chr11:13793838 1.01E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00869 K11968 - csv:101218052 1076.62