Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00873 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCAGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCCCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGCCCCTCGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTAGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCCTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGGGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTCGACCCCCAACGAACAGACGATACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1971 51.04 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSPHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14128578 14132758 - ClCG11G009110.2 Cla11g00873 284695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00873 656 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 MobiDBLite consensus disorder prediction 165 253 - -
Cla11g00873 656 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 SMART rav1_2 263 335 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 654 - -
Cla11g00873 656 SUPERFAMILY DNA-binding domain 262 331 IPR016177 GO:0003677
Cla11g00873 656 CDD AP2 262 331 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 ProSiteProfiles AP2/ERF domain profile. 263 329 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 MobiDBLite consensus disorder prediction 186 236 - -
Cla11g00873 656 Pfam AP2 domain 365 415 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 Pfam AP2 domain 263 321 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Cla11g00873 656 Gene3D AP2/ERF domain 263 331 IPR036955 GO:0003700|GO:0006355
Cla11g00873 656 MobiDBLite consensus disorder prediction 130 151 - -
Cla11g00873 656 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Cla11g00873 656 MobiDBLite consensus disorder prediction 10 29 - -
Cla11g00873 656 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Cla11g00873 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL1 5 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02264 Cla-Chr2:37751304 Cla11g00873 Cla-Chr11:14128578 4.25E-135 dispersed
Cla04g00866 Cla-Chr4:23672593 Cla11g00873 Cla-Chr11:14128578 1.23E-08 dispersed
Cla06g01334 Cla-Chr6:26737601 Cla11g00873 Cla-Chr11:14128578 2.71E-12 dispersed
Cla07g01336 Cla-Chr7:30575443 Cla11g00873 Cla-Chr11:14128578 5.06E-120 dispersed
Cla10g00737 Cla-Chr10:12068184 Cla11g00873 Cla-Chr11:14128578 2.02E-123 dispersed
Cla10g01418 Cla-Chr10:29236469 Cla11g00873 Cla-Chr11:14128578 3.21E-09 dispersed
Cla11g00873 Cla-Chr11:14128578 Cla08g01641 Cla-Chr8:29034235 1.00E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62034 PF00847 AP2 1.50E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00873 K09285 - csv:101219473 1060.83