Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00902 ATGGATAATAATTACCAAATATTCTTCCCAGCTTCCTCCTCCTCCCATAATTCACTGCCAACTACGCCCATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTATAAGTGTTCACATCAAGGATGTAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATAACTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA 435 40.0 MDNNYQIFFPASSSSHNSLPTTPMDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDNFQHILTHMQIYPSSF 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15370665 15371933 + ClCG11G009430.1 Cla11g00902 284724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00902 144 Pfam WRKY DNA -binding domain 65 122 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00902 144 SMART WRKY_cls 64 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00902 144 MobiDBLite consensus disorder prediction 9 39 - -
Cla11g00902 144 Gene3D WRKY domain 48 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00902 144 SUPERFAMILY WRKY DNA-binding domain 57 123 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla11g00902 144 ProSiteProfiles WRKY domain profile. 59 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla11g00902 144 MobiDBLite consensus disorder prediction 9 47 - -
Cla11g00902 144 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 140 IPR044810 GO:0003700
Cla11g00902 144 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 29 140 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01424 Cla11g00902 CCT
Cla05g01424 Cla11g00902 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01463 Cla-Chr7:31931187 Cla11g00902 Cla-Chr11:15370665 1.05E-58 dispersed
Cla11g00902 Cla-Chr11:15370665 Cla06g00419 Cla-Chr6:5093567 3.84E-32 dispersed
Cla11g00902 Cla-Chr11:15370665 Cla07g00746 Cla-Chr7:20796642 4.49E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62036 PF03106 WRKY 3.60E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00902 - - csv:101212622 223.402