Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00966 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACAGTCAGGGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAAAGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCTCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGTGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGACCAAGAGCCCAAGGAAGTGAACAATGAGATGAAAACTTCCACCATGAATGAGTTTGTCGATGTAGGTGCTAAATGCGATGAGGTTGAGTTGGTGTACGTCATCCTTCTAGAGATGCAACCAGACTACAATAATCATCTCAACAAGATACAACCACTAACTCTAGTAAAAGTGCACCCTCTAACTTGGACAACTGATGCGTGGAAAAGAGGAGGCTTGGTGGGCATGAGGAAAACTAGCGTCGCTGCGCTAGGGCTGCATCCAAAATTGTTGCTCTCGGGTTTTAGCGTCGCGGCAACGTCGTCCAAGCGTCGCAACGCTGTGATGCGTTCAGAAATATTGTTCTCGGGCATTAGCACCGCGGCAGAGCTATCCAAGCGCCGCGACGCTGTCATGCGTTCAACAAGTTGCGTCGAATTTTGGCGCCGCAGCAGCGCCATGATACTACTAAGTGTCCATAACGATGCGTTTAGGAAAGCTAGCGCCGCGGCGCTAGGGCTGCATCCGGAAGAAATTTGCTCTCGGGTTTTAGCGCCGCAGCAGCGTCGTCTAAGCGTTGCGACGCTAAAATGCGTTTCAGAAATATCGCTCTCAGGTTTTAGCGCTGCGGCAGCGCCATGCGTTCAACAAGGATGCGTCGAGGCAGCGCCATCCCAGCGCTGCAATGCTACTCTGCGTCCAGAACCATGCGTTGATGTGTCACCGCCTCGGCACTATCCCCAAAATTTGCCCATTTTGGGTGAAGGTTCTCACTCACTGGGAGATGACTCTGAAAATTCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGGCTACTAGAGAAGAATTCCAACGAAAAAGTGCTGGAATTTGAGAAGAAGACAAGGTTGTTCAAGTTGTTGGGTATAGTCGAGCAAGGGGTGAAGTCTGATGAATTTTGA 2403 48.4 MEHGDVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVREKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTDQEPKEVNNEMKTSTMNEFVDVGAKCDEVELVYVILLEMQPDYNNHLNKIQPLTLVKVHPLTWTTDAWKRGGLVGMRKTSVAALGLHPKLLLSGFSVAATSSKRRNAVMRSEILFSGISTAAELSKRRDAVMRSTSCVEFWRRSSAMILLSVHNDAFRKASAAALGLHPEEICSRVLAPQQRRLSVATLKCVSEISLSGFSAAAAPCVQQGCVEAAPSQRCNATLRPEPCVDVSPPRHYPQNLPILGEGSHSLGDDSENSQNPSLRRARNGGWLWLLEKNSNEKVLEFEKKTRLFKLLGIVEQGVKSDEF 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17328544 17336794 + ClCG11G009970.2 Cla11g00966 284788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00966 800 MobiDBLite consensus disorder prediction 734 755 - -
Cla11g00966 800 Pfam MFS/sugar transport protein 28 279 - -
Cla11g00966 800 Gene3D MFS general substrate transporter like domains 16 503 IPR036259 -
Cla11g00966 800 CDD MFS_SLC45_SUC 31 476 - -
Cla11g00966 800 SUPERFAMILY MFS general substrate transporter 22 485 IPR036259 -
Cla11g00966 800 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 488 - -
Cla11g00966 800 PANTHER SUGAR TRANSPORTER 18 488 - -
Cla11g00966 800 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00966 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 894.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00508 Cla-Chr7:7424041 Cla11g00966 Cla-Chr11:17328544 3.75E-32 dispersed
Cla11g00703 Cla-Chr11:9220817 Cla11g00966 Cla-Chr11:17328544 0 dispersed
Cla11g00966 Cla-Chr11:17328544 Cla11g01025 Cla-Chr11:20375369 5.42E-22 dispersed
Cla11g00966 Cla-Chr11:17328544 Cla10g01079 Cla-Chr10:24933203 5.32E-17 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g00966 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.4e-174 607.8
Cla11g00703 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 7.1e-174 607.4
Cla08g01190 . 32 455 Sucrose Transporter Gene Family AT1G22710 50.7 1.3e-122 437.2
Cla11g00966 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.2e-172 602.4
Cla11g00703 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT2G14670 51.5 1.0e-121 434.1
Cla11g00966 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.2e-144 508.1
Cla11g00703 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.4e-143 505.4
Cla08g01190 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.8e-111 398.3
Cla09g02134 . 1598 2045 Sucrose Transporter Gene Family AT2G02860 70.1 2.2e-182 635.6
Cla11g00966 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 6.0e-162 567.8
Cla11g00703 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Cla11g00966 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.6e-170 596.3
Cla11g00703 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 1.0e-169 593.6
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT5G43610 50.6 2.1e-119 426.4
Cla08g01190 . 18 455 Sucrose Transporter Gene Family AT1G09960 70.0 6.4e-183 637.5
Cla11g00703 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 6.0e-133 471.5
Cla11g00966 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.9e-132 468.8
Cla11g00703 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.8e-170 594.7
Cla11g00966 . 14 490 Sucrose Transporter Gene Family AT1G71880 61.6 7.6e-168 587.4
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT1G71880 51.4 4.2e-118 422.2
Cla11g00703 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00703 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.8e-170 594.7
Cla11g00966 . 14 490 Sucrose Transporter Gene Family AT1G71880 61.6 7.6e-168 587.4
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT1G71880 51.4 4.2e-118 422.2
Cla11g00966 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.4e-174 607.8
Cla11g00703 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 7.1e-174 607.4
Cla08g01190 . 32 455 Sucrose Transporter Gene Family AT1G22710 50.7 1.3e-122 437.2
Cla09g02134 . 1598 2045 Sucrose Transporter Gene Family AT2G02860 70.1 2.2e-182 635.6
Cla08g01190 . 18 455 Sucrose Transporter Gene Family AT1G09960 70.0 6.4e-183 637.5
Cla11g00703 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 6.0e-133 471.5
Cla11g00966 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.9e-132 468.8
Cla11g00703 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.6e-170 596.3
Cla11g00703 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 1.0e-169 593.6
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT5G43610 50.6 2.1e-119 426.4
Cla11g00966 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.2e-144 508.1
Cla11g00703 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.4e-143 505.4
Cla08g01190 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.8e-111 398.3
Cla11g00966 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.2e-172 602.4
Cla11g00703 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT2G14670 51.5 1.0e-121 434.1
Cla11g00966 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 6.0e-162 567.8
Cla11g00703 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00966 Cla_Chr11 FPKM 23.12285 24.186266 21.212742 20.318262 10.853283 9.949639 9.1578 31.064606 28.010599 29.391148