Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00966 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACAGTCAGGGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAAAGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCTCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGTGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGACCAAGAGCCCAAGGAAGTGAACAATGAGATGAAAACTTCCACCATGAATGAGTTTGTCGATGTAGGTGCTAAATGCGATGAGGTTGAGTTGGTGTACGTCATCCTTCTAGAGATGCAACCAGACTACAATAATCATCTCAACAAGATACAACCACTAACTCTAGTAAAAGTGCACCCTCTAACTTGGACAACTGATGCGTGGAAAAGAGGAGGCTTGGTGGGCATGAGGAAAACTAGCGTCGCTGCGCTAGGGCTGCATCCAAAATTGTTGCTCTCGGGTTTTAGCGTCGCGGCAACGTCGTCCAAGCGTCGCAACGCTGTGATGCGTTCAGAAATATTGTTCTCGGGCATTAGCACCGCGGCAGAGCTATCCAAGCGCCGCGACGCTGTCATGCGTTCAACAAGTTGCGTCGAATTTTGGCGCCGCAGCAGCGCCATGATACTACTAAGTGTCCATAACGATGCGTTTAGGAAAGCTAGCGCCGCGGCGCTAGGGCTGCATCCGGAAGAAATTTGCTCTCGGGTTTTAGCGCCGCAGCAGCGTCGTCTAAGCGTTGCGACGCTAAAATGCGTTTCAGAAATATCGCTCTCAGGTTTTAGCGCTGCGGCAGCGCCATGCGTTCAACAAGGATGCGTCGAGGCAGCGCCATCCCAGCGCTGCAATGCTACTCTGCGTCCAGAACCATGCGTTGATGTGTCACCGCCTCGGCACTATCCCCAAAATTTGCCCATTTTGGGTGAAGGTTCTCACTCACTGGGAGATGACTCTGAAAATTCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGGCTACTAGAGAAGAATTCCAACGAAAAAGTGCTGGAATTTGAGAAGAAGACAAGGTTGTTCAAGTTGTTGGGTATAGTCGAGCAAGGGGTGAAGTCTGATGAATTTTGA 2403 48.4 MEHGDVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVREKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTDQEPKEVNNEMKTSTMNEFVDVGAKCDEVELVYVILLEMQPDYNNHLNKIQPLTLVKVHPLTWTTDAWKRGGLVGMRKTSVAALGLHPKLLLSGFSVAATSSKRRNAVMRSEILFSGISTAAELSKRRDAVMRSTSCVEFWRRSSAMILLSVHNDAFRKASAAALGLHPEEICSRVLAPQQRRLSVATLKCVSEISLSGFSAAAAPCVQQGCVEAAPSQRCNATLRPEPCVDVSPPRHYPQNLPILGEGSHSLGDDSENSQNPSLRRARNGGWLWLLEKNSNEKVLEFEKKTRLFKLLGIVEQGVKSDEF 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17328544 17336794 + ClCG11G009970.2 Cla11g00966 284788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00966 800 MobiDBLite consensus disorder prediction 734 755 - -
Cla11g00966 800 Pfam MFS/sugar transport protein 28 279 - -
Cla11g00966 800 Gene3D MFS general substrate transporter like domains 16 503 IPR036259 -
Cla11g00966 800 CDD MFS_SLC45_SUC 31 476 - -
Cla11g00966 800 SUPERFAMILY MFS general substrate transporter 22 485 IPR036259 -
Cla11g00966 800 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 488 - -
Cla11g00966 800 PANTHER SUGAR TRANSPORTER 18 488 - -
Cla11g00966 800 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00508 Cla-Chr7:7424041 Cla11g00966 Cla-Chr11:17328544 3.75E-32 dispersed
Cla11g00703 Cla-Chr11:9220817 Cla11g00966 Cla-Chr11:17328544 0 dispersed
Cla11g00966 Cla-Chr11:17328544 Cla11g01025 Cla-Chr11:20375369 5.42E-22 dispersed
Cla11g00966 Cla-Chr11:17328544 Cla10g01079 Cla-Chr10:24933203 5.32E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00966 K15378 - csv:116401998 894.804