Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00998 CTTCTCACCATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACTACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGCCTCTCCAATTTCCCAAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCTGCTGCAGGCATCACCAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCCGGATCAGGTGTGGTCCACATGGTCGGCGGCATAGCTGGTCTCTGGGGTGCCTTAATCGAAGGCCCTCGGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTTTGGTTCGGGTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGTCCTTACTACGGACAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGCCTTTTAGGTGGATTTGCCGCTATCACGTCTGGTTGTGCTGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTAGAGGCGGCACAACTGCATGGCGGGTGTGGGGCATGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAAGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGTTGTTGGCAGCCCAATTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGCTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTAGTTCAGGGATGGTAGCTGTTTGA 1545 50.68 LLTMATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19217089 19219419 + ClCG11G010290.1 Cla11g00998 284820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00998 514 PANTHER AMMONIUM TRANSPORTER 8 505 - -
Cla11g00998 514 PANTHER AMMONIUM TRANSPORTER 8 505 - -
Cla11g00998 514 ProSitePatterns Ammonium transporters signature. 207 232 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla11g00998 514 Gene3D Ammonium transporter AmtB like domains 33 490 IPR029020 -
Cla11g00998 514 SUPERFAMILY Ammonium transporter 49 456 - -
Cla11g00998 514 Pfam Ammonium Transporter Family 55 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cla11g00998 514 TIGRFAM amt: ammonium transporter 52 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00136 Cla-Chr7:1555244 Cla11g00998 Cla-Chr11:19217089 0 dispersed
Cla07g01480 Cla-Chr7:32066972 Cla11g00998 Cla-Chr11:19217089 4.01E-12 dispersed
Cla10g02113 Cla-Chr10:36819904 Cla11g00998 Cla-Chr11:19217089 2.94E-19 dispersed
Cla11g00998 Cla-Chr11:19217089 Cla06g00721 Cla-Chr6:9209585 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00998 K03320 K07573 csv:101222356 928.317