Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01084 ATGCATGGATGTAATTCTAATAGAGTGTTCTTACAGAGGAGGAATTGGAAGATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCCTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 708 50.99 MHGCNSNRVFLQRRNWKMASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 21962719 21964482 - ClCG11G011120.1 Cla11g01084 284906
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01084 235 Pfam Lateral organ boundaries (LOB) domain 26 123 IPR004883 -
Cla11g01084 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 200 - -
Cla11g01084 235 MobiDBLite consensus disorder prediction 216 235 - -
Cla11g01084 235 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Cla11g01084 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 19 200 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01323 Cla-Chr1:26581837 Cla11g01084 Cla-Chr11:21962719 2.29E-53 dispersed
Cla01g02437 Cla-Chr1:38009851 Cla11g01084 Cla-Chr11:21962719 5.34E-40 dispersed
Cla02g01308 Cla-Chr2:27234597 Cla11g01084 Cla-Chr11:21962719 3.67E-57 dispersed
Cla06g01688 Cla-Chr6:30476051 Cla11g01084 Cla-Chr11:21962719 2.80E-59 dispersed
Cla09g01802 Cla-Chr9:35578162 Cla11g01084 Cla-Chr11:21962719 4.57E-30 dispersed
Cla09g01879 Cla-Chr9:36482539 Cla11g01084 Cla-Chr11:21962719 7.73E-51 dispersed
Cla11g00579 Cla-Chr11:6550126 Cla11g01084 Cla-Chr11:21962719 4.51E-50 dispersed
Cla11g01084 Cla-Chr11:21962719 Cla09g02200 Cla-Chr9:39611639 4.29E-45 dispersed
Cla11g01084 Cla-Chr11:21962719 Cla10g01326 Cla-Chr10:28218498 1.02E-60 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62043 PF03195 LOB 4.90E-43 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01084 - - csv:101203281 419.468