Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g01084 | ATGCATGGATGTAATTCTAATAGAGTGTTCTTACAGAGGAGGAATTGGAAGATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCCTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 708 | 50.99 | MHGCNSNRVFLQRRNWKMASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 21962719 | 21964482 | - | ClCG11G011120.1 | Cla11g01084 | 284906 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g01084 | 235 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 123 | IPR004883 | - | |
| Cla11g01084 | 235 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 19 | 200 | - | - | |
| Cla11g01084 | 235 | MobiDBLite | consensus disorder prediction | 216 | 235 | - | - | |
| Cla11g01084 | 235 | ProSiteProfiles | LOB domain profile. | 25 | 126 | IPR004883 | - | |
| Cla11g01084 | 235 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 19 | 200 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01323 | Cla-Chr1:26581837 | Cla11g01084 | Cla-Chr11:21962719 | 2.29E-53 | dispersed | |
| Cla01g02437 | Cla-Chr1:38009851 | Cla11g01084 | Cla-Chr11:21962719 | 5.34E-40 | dispersed | |
| Cla02g01308 | Cla-Chr2:27234597 | Cla11g01084 | Cla-Chr11:21962719 | 3.67E-57 | dispersed | |
| Cla06g01688 | Cla-Chr6:30476051 | Cla11g01084 | Cla-Chr11:21962719 | 2.80E-59 | dispersed | |
| Cla09g01802 | Cla-Chr9:35578162 | Cla11g01084 | Cla-Chr11:21962719 | 4.57E-30 | dispersed | |
| Cla09g01879 | Cla-Chr9:36482539 | Cla11g01084 | Cla-Chr11:21962719 | 7.73E-51 | dispersed | |
| Cla11g00579 | Cla-Chr11:6550126 | Cla11g01084 | Cla-Chr11:21962719 | 4.51E-50 | dispersed | |
| Cla11g01084 | Cla-Chr11:21962719 | Cla09g02200 | Cla-Chr9:39611639 | 4.29E-45 | dispersed | |
| Cla11g01084 | Cla-Chr11:21962719 | Cla10g01326 | Cla-Chr10:28218498 | 1.02E-60 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 62043 | PF03195 | LOB | 4.90E-43 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g01084 | - | - | csv:101203281 | 419.468 |