Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01089 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCATTTGCATTTTTGTCACTCGTTGCTGGTTGGCATGTTGCTTCTCAGGGGAAAGTTGCTGATCATATTTTGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAATATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGCGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCCGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1311 46.15 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPFAFLSLVAGWHVASQGKVADHILEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22239628 22248833 + ClCG11G011180.1 Cla11g01089 284911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01089 436 Pfam Protein tyrosine and serine/threonine kinase 324 409 IPR001245 GO:0004672|GO:0006468
Cla11g01089 436 Pfam Protein tyrosine and serine/threonine kinase 133 301 IPR001245 GO:0004672|GO:0006468
Cla11g01089 436 SMART serkin_6 132 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01089 436 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01089 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cla11g01089 436 SUPERFAMILY Protein kinase-like (PK-like) 117 409 IPR011009 -
Cla11g01089 436 PANTHER SERINE-THREONINE PROTEIN KINASE 324 427 - -
Cla11g01089 436 PANTHER SERINE-THREONINE PROTEIN KINASE 2 301 - -
Cla11g01089 436 CDD STKc_MAP3K-like 139 409 - -
Cla11g01089 436 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 301 - -
Cla11g01089 436 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Cla11g01089 436 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 324 427 - -
Cla11g01089 436 Gene3D Transferase(Phosphotransferase) domain 1 215 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02251 Cla-Chr1:36458051 Cla11g01089 Cla-Chr11:22239628 7.75E-88 dispersed
Cla03g00768 Cla-Chr3:9323890 Cla11g01089 Cla-Chr11:22239628 2.32E-83 dispersed
Cla06g01701 Cla-Chr6:30598998 Cla11g01089 Cla-Chr11:22239628 1.62E-62 dispersed
Cla10g01357 Cla-Chr10:28613891 Cla11g01089 Cla-Chr11:22239628 2.02E-68 dispersed
Cla10g02141 Cla-Chr10:37063622 Cla11g01089 Cla-Chr11:22239628 2.37E-61 dispersed
Cla11g01089 Cla-Chr11:22239628 Cla01g01294 Cla-Chr1:26249281 1.78E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80941 PF07714 PK_Tyr_Ser-Thr 6.40E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01089 - - csv:101213713 818.92