Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01099 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAATTTGGACGGTCAAGTTTGTGAGATCTGTGGCGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCCGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACCTTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTACGGTAGAGGCCCAGATGATGAAGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGTAAATTTTCTCTACACCATTGTTTTTGCATTAGCTGCATGAAGTTTCATTTTCGTAAGGTAGTTGATATGCTTTCAAAACACCAGGGAGTACAAGATGGGATGAAAAGAAAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCGTACCGGATGGTTATTGTAGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGCTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTCTCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCGGTCGACATCTTTGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGACAAGATTTCATGCTACGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCGAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCGACATTTGTGAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCAGCAGAAGGATGGATAATGCAGGATGGAACACCGTGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTCGATGCAGAAGGAAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCTGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTCAAGCACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGATAAGGAGCTACTGATGTCACAAATGAATTTTGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCCGTTTGGTATGGTCATAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTAAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCCCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTATTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTCGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAACGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCAGACAAAACCGCACACCAACTATAGTCGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGAAATGTGGACTAAATTGCTGA 3174 44.11 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDLEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGKFSLHHCFCISCMKFHFRKVVDMLSKHQGVQDGMKRKRKVGKIEWMIGNCSKAILGLNLMMPMTLTWLSRQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKHSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGHKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22410357 22414910 - ClCG11G011270.2 Cla11g01099 284921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01099 1057 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Cla11g01099 1057 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 457 643 IPR029044 -
Cla11g01099 1057 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cla11g01099 1057 Pfam Cellulose synthase 352 1051 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla11g01099 1057 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1057 - -
Cla11g01099 1057 SUPERFAMILY RING/U-box 21 109 - -
Cla11g01099 1057 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Cla11g01099 1057 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1057 - -
Cla11g01099 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Cla11g01099 1057 SUPERFAMILY Nucleotide-diphospho-sugar transferases 365 881 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00881 Cla-Chr2:12482048 Cla11g01099 Cla-Chr11:22410357 1.59E-143 dispersed
Cla02g00882 Cla-Chr2:12556221 Cla11g01099 Cla-Chr11:22410357 6.69E-139 dispersed
Cla09g00379 Cla-Chr9:3707850 Cla11g01099 Cla-Chr11:22410357 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01099 K10999 - csv:101214842 1989.16