Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g01109 | AATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATCCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA | 618 | 46.28 | NSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA | 205 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 22535585 | 22536453 | - | ClCG11G011380.1 | Cla11g01109 | 284931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g01109 | 205 | ProSitePatterns | Pectinesterase signature 2. | 53 | 62 | IPR033131 | - | |
| Cla11g01109 | 205 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 1 | 202 | - | - | |
| Cla11g01109 | 205 | Gene3D | - | 1 | 200 | IPR012334 | - | |
| Cla11g01109 | 205 | SUPERFAMILY | Pectin lyase-like | 11 | 198 | IPR011050 | - | |
| Cla11g01109 | 205 | PANTHER | PECTINESTERASE | 1 | 202 | - | - | |
| Cla11g01109 | 205 | Pfam | Pectinesterase | 12 | 192 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g02192 | Cla-Chr2:37069144 | Cla11g01109 | Cla-Chr11:22535585 | 1.19E-154 | dispersed | |
| Cla02g02194 | Cla-Chr2:37077547 | Cla11g01109 | Cla-Chr11:22535585 | 6.36E-86 | dispersed | |
| Cla11g01109 | Cla-Chr11:22535585 | Cla07g01044 | Cla-Chr7:26925844 | 8.24E-62 | dispersed | |
| Cla11g01109 | Cla-Chr11:22535585 | Cla08g01478 | Cla-Chr8:27653586 | 1.63E-49 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g01109 | K01051 | - | csv:101205095 | 372.859 |