Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01134 ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACCGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGTGACGACGATGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACCGAAGACTTCGGTACCATGTTCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAATGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACGGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGGGAAATGCAGATGTGGGGCATCGGCTATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAACAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCTGAACCACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGAGTAATATTCTTGATGGAAAATCGGATTCCACAATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACGTTGAAGAATGTAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2481 46.96 MDPPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMFVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQCMGELGFGKQRKGNGSRRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIGKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVANEMAAGGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPPTGSLHNESLSISVTRVDSSVLDRTRGIVSNILDGKSDSTMHASSPSFLGIHEHSTLKNVTVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23296140 23311866 + ClCG11G011620.2 Cla11g01134 284956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01134 826 ProSiteProfiles Protein kinase domain profile. 256 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01134 826 Gene3D Transferase(Phosphotransferase) domain 1 252 544 - -
Cla11g01134 826 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524
Cla11g01134 826 MobiDBLite consensus disorder prediction 219 233 - -
Cla11g01134 826 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 198 816 - -
Cla11g01134 826 SMART serkin_6 256 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01134 826 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 198 816 - -
Cla11g01134 826 MobiDBLite consensus disorder prediction 31 50 - -
Cla11g01134 826 MobiDBLite consensus disorder prediction 213 252 - -
Cla11g01134 826 MobiDBLite consensus disorder prediction 160 183 - -
Cla11g01134 826 MobiDBLite consensus disorder prediction 115 199 - -
Cla11g01134 826 SUPERFAMILY Protein kinase-like (PK-like) 253 511 IPR011009 -
Cla11g01134 826 MobiDBLite consensus disorder prediction 24 94 - -
Cla11g01134 826 Pfam Protein kinase domain 256 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01134 826 CDD STKc_MAP4K3_like 255 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01134 - - - csv:101209775 1368.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01476 Cla-Chr3:30269699 Cla11g01134 Cla-Chr11:23296140 1.50E-38 dispersed
Cla07g00673 Cla-Chr7:14469346 Cla11g01134 Cla-Chr11:23296140 0 dispersed
Cla07g00676 Cla-Chr7:14488772 Cla11g01134 Cla-Chr11:23296140 0 dispersed
Cla11g01134 Cla-Chr11:23296140 Cla11g01746 Cla-Chr11:31039965 5.09E-71 dispersed
Cla11g01134 Cla-Chr11:23296140 Cla05g00470 Cla-Chr5:4284570 3.07E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80944 PF00069 Pkinase 7.40E-68 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01134 Cla_Chr11 FPKM 0.658527 0.834489 0.551334 0.423755 6.0306 5.337813 5.490108 0.0 0.0 0.098034