Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01141 ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCATCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAAAAGAGAATCGAATCGGAGATTTCAGATCTGGAAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAATGGCAGTGGAAACTCCAGAAAGAGAACGAACGATTATAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTAGTGAGTTTGACGTGCGGAAGAAGAAGCGATGCGGTACTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTTGTTGCCAACAGAGTTATGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTACGAGCATTTGA 732 44.95 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLEGKIENRTTNEEDDDHNGSGNSRKRTNDYNRQVREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVMNTLFLEAERAEEEELKVKIERAIAAISDQQSPTSI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23611726 23620009 - ClCG11G011690.1 Cla11g01141 284963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01141 243 MobiDBLite consensus disorder prediction 110 143 - -
Cla11g01141 243 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Cla11g01141 243 Gene3D - 47 114 IPR036638 GO:0046983
Cla11g01141 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Cla11g01141 243 MobiDBLite consensus disorder prediction 110 145 - -
Cla11g01141 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Cla11g01141 243 Coils Coil 213 233 - -
Cla11g01141 243 Coils Coil 87 114 - -
Cla11g01141 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983
Cla11g01141 243 SMART finulus 54 103 IPR011598 GO:0046983
Cla11g01141 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01141 Cla-Chr11:23611726 Cla03g00378 Cla-Chr3:4383133 1.13E-17 dispersed
Cla02g02106 Cla-Chr2:36080981 Cla11g01141 Cla-Chr11:23611726 6.33E-21 transposed
Cla11g01141 Cla-Chr11:23611726 Cla06g01360 Cla-Chr6:27100692 4.38E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62046 PF00010 HLH 7.30E-11 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01141 - - csv:101203107 367.851