Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01161 ATGATGGGTGAGGAGGCAATGGAGAAGATCAATAAGAAATTAATGAGAGAAAACAAATTGCAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTTCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTCATTGTCCCTACAAGAACTCTTATTGTCGTTCATGATTCCCTCCTCATTTCCCAACTTCAAATTGTCAAAGCTCTGAATGAAGCAAGATTAGAGGCAAATATACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGATTGCTTCTAACGGCGTCGTTTTTGAAGTATGTGTACCACCCATTGCGGTGGCTTGCCATCGCCGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCCGTTGTGGGGACAATTGCAATGGATGATTACATGGAAGCTGGAAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGAGTTCATTGATGAGGGTAGCCCCTGAAAAAGCGATTATAGCTGAAAGTGGAGAGGTTGTGGATACAAAAGAGGTGAAATTGAACAGTGTATTGGCTGTGAAGGCTGGGGAAGTTATTCCCATTGATGGTATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAGACTTTGACTGGAGAAACATTCCCAGTTCCCAAACACAAACATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATCAGTGTTCAAACTACAGTTGTTGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCATAATAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCTGCTGTTGTTACGATATCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTCTTAGTGAGTGCATGTCCCTGTGCCCTAATTCTCTCCACCCCGGTTGCCGCCTTTTGCGCCCTTACGAAGGCTGCCATGGCCGGAGTTTTAATCAAAGGCAGCGACCACCTTGAAGTTCTTTCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGTTGTGACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATCGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTGAACCATGGAAAGTTGTTTTCTATTGATCTTAAACCCGAAAGCGTTGAGGAATTTGAAAATTTTCCAGGAGAGGGTGTTCGTGGGAAGATGGATGGAAATGATATTTACATTGGAAGTAAGAAAATTGGTGATAGAGCTGGCTACCACACACCAGATTTGAAGTTATTTGATGATGAAACAAAACAAGAGCAAACCCTGGGATATGTATTTTGTGGGGGGACGTTAATTGGATCCTTCGGTCTTTCGGATTCGTGTCGTTCTGGAGTCAAAGAGGCAATCCAGGAGATTAAGAGTTTTGGTATTAAAACTGCTATGCTCACCGGAGATTGTAGTGCAGCTGCCATGCATGCCCAAGAACAGCTCGGGAATGCGTTCGATGTAATCCATTCACAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGGATGGAGCAATAATTGCCATGGTTGGAGATGGCTTAAATGATACTCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCATTGGCCACTCAAACTGGGAATGTGATCTTAATGTCAAATGACATGAGAAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATTCCATACAAAAGTAGTTCAAAATGTCATTTTGTCAATTGGTACCAAGACTGCCATCCTCGGCCTAGCATTCGCCGGACATCCGCTCGTTTGGGCAGCTGTTCTCGCCGATGTCGGTACTTGCCTAATGGTCATCTTGAATAGCATGCTCCTTTTGAGAGGAATTGATCACAAACATGGGAAGAAATGTTGCAAATCTTCCAAGTCGTGCTTGGCAAAACATGGACCACGATGCAATGGTGGTAGCACTCGATTGTCTCATCATCACTACAATCATCGATGCATCGTCGATGATCAATCGCCTAGTCGAGAGAATAATCATATCCATAAGCATTGTTGTTTTGAGAAAAATGATCATAAGATTCAACTTTCTGATCAAGATCACAATAAAAAAAATTGTGGAATGAATCACGAGAAGAATCATGATCAATATGATGATCATGAATGTGAAGAAACTAATGTACCTAGTAAAAAAGAATATAAATTTCATCACAACCACCATTCAAATCAACGTGAGAAAGAGAGTAATGGAACTTCTTCAAAGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATATTGCTATTGAGATTCATGAAGTTAATGAAGGTTAG 2592 41.17 MMGEEAMEKINKKLMRENKLQRSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAIAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMRVAPEKAIIAESGEVVDTKEVKLNSVLAVKAGEVIPIDGIVVEGKCEVDEKTLTGETFPVPKHKHSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAHNNKSKTQRFIDECAKYYTPAVVTISACLAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLSKIKVMAFDKTGTITRGEFVVTHFQALRDDISFHTLLQWVSSIESKSSHPMAAALVNHGKLFSIDLKPESVEEFENFPGEGVRGKMDGNDIYIGSKKIGDRAGYHTPDLKLFDDETKQEQTLGYVFCGGTLIGSFGLSDSCRSGVKEAIQEIKSFGIKTAMLTGDCSAAAMHAQEQLGNAFDVIHSQLLPKEKANIIKEFKKDGAIIAMVGDGLNDTPALATADIGISMGVSGSALATQTGNVILMSNDMRKIPKAIKLAKKFHTKVVQNVILSIGTKTAILGLAFAGHPLVWAAVLADVGTCLMVILNSMLLLRGIDHKHGKKCCKSSKSCLAKHGPRCNGGSTRLSHHHYNHRCIVDDQSPSRENNHIHKHCCFEKNDHKIQLSDQDHNKKNCGMNHEKNHDQYDDHECEETNVPSKKEYKFHHNHHSNQREKESNGTSSKKVAESNCNCHSHHIAIEIHEVNEG 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24336026 24345875 - ClCG11G011890.1 Cla11g01161 284983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01161 863 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Cla11g01161 863 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Cla11g01161 863 PRINTS P-type cation-transporting ATPase superfamily signature 551 561 - -
Cla11g01161 863 PRINTS P-type cation-transporting ATPase superfamily signature 606 625 - -
Cla11g01161 863 PRINTS P-type cation-transporting ATPase superfamily signature 630 642 - -
Cla11g01161 863 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
Cla11g01161 863 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 154 493 - -
Cla11g01161 863 SFLD C1.7: P-type atpase like 385 658 - -
Cla11g01161 863 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 154 709 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cla11g01161 863 SUPERFAMILY HAD-like 402 707 IPR036412 -
Cla11g01161 863 CDD P-type_ATPase_HM 104 708 - -
Cla11g01161 863 Gene3D - 395 657 IPR023214 -
Cla11g01161 863 Gene3D - 191 306 - -
Cla11g01161 863 MobiDBLite consensus disorder prediction 820 837 - -
Cla11g01161 863 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 397 IPR023298 -
Cla11g01161 863 MobiDBLite consensus disorder prediction 820 843 - -
Cla11g01161 863 SFLD p-type atpase 385 658 IPR044492 -
Cla11g01161 863 PRINTS Copper-transporting ATPase signature 194 212 - -
Cla11g01161 863 PRINTS Copper-transporting ATPase signature 583 600 - -
Cla11g01161 863 PRINTS Copper-transporting ATPase signature 641 655 - -
Cla11g01161 863 Pfam haloacid dehalogenase-like hydrolase 399 620 - -
Cla11g01161 863 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
Cla11g01161 863 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Cla11g01161 863 Gene3D - 414 537 IPR023299 GO:0000166
Cla11g01161 863 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 177 683 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla11g01161 863 Pfam E1-E2 ATPase 214 381 - -
Cla11g01161 863 Gene3D - 17 89 - -
Cla11g01161 863 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 16 730 - -
Cla11g01161 863 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 16 730 - -
Cla11g01161 863 SUPERFAMILY HMA, heavy metal-associated domain 17 86 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01161 Cla-Chr11:24336026 Cla10g01496 Cla-Chr10:30188099 2.59E-18 dispersed
Cla01g00273 Cla-Chr1:2823528 Cla11g01161 Cla-Chr11:24336026 1.34E-72 transposed
Cla01g02498 Cla-Chr1:38644565 Cla11g01161 Cla-Chr11:24336026 2.40E-81 transposed
Cla02g00739 Cla-Chr2:8979134 Cla11g01161 Cla-Chr11:24336026 1.05E-59 transposed
Cla02g01205 Cla-Chr2:25640910 Cla11g01161 Cla-Chr11:24336026 1.39E-68 transposed
Cla04g00465 Cla-Chr4:17517724 Cla11g01161 Cla-Chr11:24336026 6.85E-66 transposed
Cla05g01629 Cla-Chr5:27669456 Cla11g01161 Cla-Chr11:24336026 4.85E-63 transposed
Cla11g01161 Cla-Chr11:24336026 Cla06g01348 Cla-Chr6:26954434 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01161 K01534 - csv:101203668 1404.42