Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01180 ATGATGGGATCTTTAGTGGTGGCGGAATACAATGTGTCCTTTATTGGTGCTATTTTCGACTCGCCAAAATCTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCACATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCATATCCGAAAAGAAGTCATCCGTGCCTGACGTTTTGAAAAACCTTGAGCCACAGTCTCCTGCAGGTGGCCATAAAAATACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTGCAAATGACTTTCCAACCAGTAGTTCCCATAATGATTTGGGTCATATGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTGAGTCCCGAAGATGCTTTTTGTAGAAGGTGTTCATGTTGCATCTGTCGTCAGTATGATGATAACAAGGACCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCGAAAGCCGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTTTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGGGTCGACATACTGTGTTATCGTGTTTCTTTGAGTCAAAAGCTTCTCCATAGAACTGAGAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGTACCGGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCTGGACCCGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGATCTCCAGCAATTCCTTGCACCTTTCGCCTAATCCTGACATTCAAGATGCAAATTTTGTTCCTGCAAACATGGTTAGATTTGAAGATGTTCAGTCAACATCCCTCACTCTAGTTTTGAGTTGTGAAAATGGATCCTCTGAGAACCAGGTCGGCTTCACCTTATGGCATCGTAAGGCAGATGATGCAGATTACCCGGCAGAACCGACATGTATTCTACGACAACCGAAGGCGAGGTGTGCTGTGATGGGACTATCACCTGCTACTAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTGCAGTTCTCAACAATTAGGGAGGTAGAAGAAAACCCAGGCTGTTTAGAAATTGAAAGAAGCCAAAGCCATGCAACCAACTGTAGCGACCTATCTAATCCTTCTTCGGTTGAAGACGAAACTACCGACATTCTTCCCTATGGTGATCGAACCGATAACCTAGGAAAAAACTCCACTGCCTATTCAAAGGGCACCGAAATGCTTTCCTCGGCTATCTTATCGACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCGGGAACAGTTTCTGTGTTGGATGAGGCAAATGCTACAGGAATGGTAGGTTTGATCCCCAGTTCTGTTGCATCAAAGCTCGAGAACAGGCATGGACCAACTGCCCCAAAACTCAACACCGATAATCAGTTAAACGCCCTTGTTCGATCTGGTATGGAGCGCCAGCCATTCGTTGGCTGTTCTTCAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGAGGTGAGAGACCGAAATCCGGCTGCAAGGATCTCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGCGGCACGTCAAAGATGCGAACTGGGGAAAGACAGGACGACAAATGTGCTGAAAATGGTGTTTCAGATCGGGATTTCGAGCATTATGTGAAGGTCATTAGATGGTTAGAATGCGAGGGTCATATTGAAAAAAATTTCAGGCAGAAATTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTTAGGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCTGAATGCATTTCGAGCAAAAAACCGACGACTATGCCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2226 44.12 MMGSLVVAEYNVSFIGAIFDSPKSSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKSSVPDVLKNLEPQSPAGGHKNTKRQRKSEHLAQLSVPANDFPTSSSHNDLGHMACCKNLACRATLSPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHRTEKYKVLYQIVDESVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMISSNSLHLSPNPDIQDANFVPANMVRFEDVQSTSLTLVLSCENGSSENQVGFTLWHRKADDADYPAEPTCILRQPKARCAVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSAILSTDAFNLSDNGEEGTPAGTVSVLDEANATGMVGLIPSSVASKLENRHGPTAPKLNTDNQLNALVRSGMERQPFVGCSSDGLPITPCKLEVLKDSLGRGERPKSGCKDLDNRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVRVFVDTFIEDPASLAEQLVDTFSECISSKKPTTMPPGFCMKLWH 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24709214 24713473 - ClCG11G012100.2 Cla11g01180 285002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01180 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 741 - -
Cla11g01180 741 MobiDBLite consensus disorder prediction 608 649 - -
Cla11g01180 741 MobiDBLite consensus disorder prediction 98 121 - -
Cla11g01180 741 Pfam PHD - plant homeodomain finger protein 147 266 IPR032881 -
Cla11g01180 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 741 IPR044514 GO:0010048|GO:0040029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01336 Cla11g01180 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g00237 Cla-Chr11:2738439 Cla11g01180 Cla-Chr11:24709214 5.17E-22 dispersed
Cla11g01180 Cla-Chr11:24709214 Cla09g00364 Cla-Chr9:3565471 4.10E-09 dispersed
Cla08g01157 Cla-Chr8:24418038 Cla11g01180 Cla-Chr11:24709214 6.59E-17 transposed
Cla11g01180 Cla-Chr11:24709214 Cla06g01336 Cla-Chr6:26765168 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01180 - - csv:101222501 1358.97