Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01200 ATGGGGTTCTCATCGCCTGTTAAGATACTCGTCGGGATTCCTTCCGACAACATCGATGAGAGCAAGAAGCTTCTTTCTTGGGCGATCACAGTTCTAGCTCATCAACATGACTGCATTGTTGCTACTCATGTTCTTGTCAGCGACGATACGAAGAAGCGTGGATCGACCAACACGACGATGAAAATTCAATCACAGCTTCGCCGAGCAAAAGCCTATGTCATATCGATTCTCGGAGAGTTCGCCAATATTAGCCAATCCAAGCAGGTAAATTTGGAAGCGAGAGTTGGTTTTAACTCGAGCATTGGAAGAGGTTTGACTGAAGAAGCGAGGTCGATTTCAGCCGACCTCCTCGTTCTTCGTGGGGCAAGAAACAAATCAAACAGAAGTCCCAGCATTGGAAGGTATTGTTTGGAGAATGCTCCTGAGAAATGTACTCTGGTCTTCTTGGGAAAGCAAGAGCAGATCAAACAAAATTTGGAATTTGATTCTAATTCTCTTCCATCTAAAGGAAACATTACTACTAAATTATATCATCATTTTCAAATCGCAGAAGAAGATAAATGCGACAAAGAAGTTTTTAGAGCTGAAAAGGCAGAGAGCAATAGGGTTCCGCCACTCGTGGCGGTGGACGATGAAGCGGAAGCCTCCGGCGACTCCATTTCAAACACCACCACAGAGGACGACTCCTCCACGTCGGGCGACTGCAGCACTATCGGCTCTCCTCCTCCACTAGTTTCCCCTTTCAAATCCCAATCCGGTGACCGGAGACAGCGATTGTCGCCGTGTAAATTGATATCGTCGTTCATCGGGTCGCCTTTTCGGAAGAGAAATTGTAGCTTTTCTGAGAAGCAATCGGGTCAGCCTTTGTTAAGATGCTTCAGCTATGAGGAGATTTTGAATGCTACCAATAATTTCCATCCAGATAACATGGTAGGGCAAGGTGGGTATTCAGAAGTTTACAAAGGAGAACTATGTGATGGAAAGATGATTGCTGTGAAGAGACTAACAAAAGACAACAAAGATGGTAACAAAGAGAAAGAATTTCTTATGGAACTTGGAATAATTGGTCATGTCTTTCATCCAAACACAGCTTCTTTGGTTGGCTGTTGCATTGAAAATGGCCTTTATCTCATCTTCAACTTCTCTCAAAATGGAAACCTTTCTTCTGCATTGCATGTGAGATACAAGATTGCTGTGGGAATTGCAAGGGGTTTGCATTATCTTCATGAATGTTGCAAACATCGAATAATCCACAGAGACATCAAAGCTTCTAATGTTCTTCTTGGCCCTGATTATGAACCTCAGATAACAGACTTTGGGCTAGCAAAATGGCTTCCAAACAAATGGACACACCATGCAGTAGTTCCAATAGAAGGCACATTTGGGTACTTAGCACCAGAATATTTCATGCATGGTCTAGTTGATGAAAAAACTGATGTTTTTGCTTTTGGAGTTCTTCTTTTGGAGATTGTCACTGGTAGAAGGCCTGTTGATTCATCCAAACAAAGCCTTCTCTTGTGGGCAAAGCCTCTTATGGAGTCGGGTGAGATCGGGCAGCTGGCCGACCCAAGGCTCAAATGCTACAACGCGAAGGAGTTGCAAAGAGTCGTCTTGGCTGCTTCTTGCTGCGTTCGACAGTCCTCGGTCGAACGACCATCGATGAGCGAGGTATTGGATGTGCTAAATAAAGGGCATGATTCAGAGATTGCAAAGAGCTTGAGAACCCCAAAGTTTACCTCTGAAGATGAAAATGAATTGGATGATTACTCCATGATCTTTGGATATGAAGTTCCAATAGACATTCTTCTTGAGGATTATTTATGA 1824 43.59 MGFSSPVKILVGIPSDNIDESKKLLSWAITVLAHQHDCIVATHVLVSDDTKKRGSTNTTMKIQSQLRRAKAYVISILGEFANISQSKQVNLEARVGFNSSIGRGLTEEARSISADLLVLRGARNKSNRSPSIGRYCLENAPEKCTLVFLGKQEQIKQNLEFDSNSLPSKGNITTKLYHHFQIAEEDKCDKEVFRAEKAESNRVPPLVAVDDEAEASGDSISNTTTEDDSSTSGDCSTIGSPPPLVSPFKSQSGDRRQRLSPCKLISSFIGSPFRKRNCSFSEKQSGQPLLRCFSYEEILNATNNFHPDNMVGQGGYSEVYKGELCDGKMIAVKRLTKDNKDGNKEKEFLMELGIIGHVFHPNTASLVGCCIENGLYLIFNFSQNGNLSSALHVRYKIAVGIARGLHYLHECCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVVPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLEIVTGRRPVDSSKQSLLLWAKPLMESGEIGQLADPRLKCYNAKELQRVVLAASCCVRQSSVERPSMSEVLDVLNKGHDSEIAKSLRTPKFTSEDENELDDYSMIFGYEVPIDILLEDYL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25119407 25128162 + ClCG11G012290.2 Cla11g01200 285022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01200 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cla11g01200 607 SMART serkin_6 305 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01200 607 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 121 - -
Cla11g01200 607 Gene3D Transferase(Phosphotransferase) domain 1 382 582 - -
Cla11g01200 607 Gene3D HUPs 8 148 IPR014729 -
Cla11g01200 607 MobiDBLite consensus disorder prediction 216 257 - -
Cla11g01200 607 SUPERFAMILY Protein kinase-like (PK-like) 280 561 IPR011009 -
Cla11g01200 607 Pfam Universal stress protein family 10 147 IPR006016 -
Cla11g01200 607 Pfam Protein kinase domain 306 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01200 607 Gene3D Phosphorylase Kinase; domain 1 277 381 - -
Cla11g01200 607 PANTHER OS08G0249100 PROTEIN 7 597 - -
Cla11g01200 607 ProSiteProfiles Protein kinase domain profile. 305 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01200 607 CDD USP_Like 8 147 - -
Cla11g01200 607 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Cla11g01200 607 MobiDBLite consensus disorder prediction 203 258 - -
Cla11g01200 607 PANTHER OS08G0249100 PROTEIN 7 597 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01298 Cla11g01200 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01339 Cla-Chr6:26790441 Cla11g01200 Cla-Chr11:25119407 2.27E-132 dispersed
Cla08g00627 Cla-Chr8:18303997 Cla11g01200 Cla-Chr11:25119407 8.03E-08 dispersed
Cla10g00741 Cla-Chr10:12245490 Cla11g01200 Cla-Chr11:25119407 3.10E-112 dispersed
Cla11g01200 Cla-Chr11:25119407 Cla07g01184 Cla-Chr7:28822190 8.56E-72 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80945 PF00069 Pkinase 1.10E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01200 - - csv:101218728 1040.41