Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01201 ATGCACTCCTTCGCCGCCGGCTGGCCCGGCGTCGCCACCGCCAAACCCCTCTGCTATTCCTGCAAGTCCGCCACCCCTACCCTCTTCTGCCGCCATGACACTGCCTTCCTCTGCCTCCGCTGCGACTTCCAAATCCACACTCTCTCCGGCACGCGCCACCCACGTGTCTGGCTCTGCGAAGTCTGCGAGCAAGCTCCGGCTACCATCACCTGCAATGCCGACGCTGCTGCCCTCTGCCCCTCCTGCGACGCTGATATCCACTCTGTTAACCCCCTTGCCCGCCGTCACGACCGTTCTGCTATTCAACCTTTCTACGACTCACCCCCGTCTGCCTCCGTCGCCTCCGTCTTCAAATTCCTCCTCCCCACTCAACACCACCACGACGTCGTTCAACCCGATTTGAAATCGGAGGATATCTTCTTCTCCGAGATGGATTCGTTGATTGATTTCGATTACCCGACTACCGGTGATGGAGTTGTTCCTGATGAATCCAATCCAGGAACAGAGTCCACTACCCCGCCCACGGATTACTCCACTAGAAATTTCTGCGGGTTCGAGCTCTTTAGTACTCGATCTAAACTCCACAACATTAGCTACCCATCTCAGAATCTTAGCCATAGCGTTTCTTCATCTTCTTTAGACGTTGGAGTTGTGCCAGATCGGAACACGGCTTCCGACGCGTCGTTTCCGGAGGGGCAGATGGCGGAGAAGGCGGTGCAATTGCGGGGGATGGATAGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAGAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCGAGGAAAGCTTATGCGGAAATTCGGCCGAGGGTTAAAGGGAGATTCGTTAAACGAAGTGAAACAAACTGCGAAATTGACAGAATCTACGCCGGCGCCGGCGTCGGATTCATGGTAAGCGAGGGGCAATACGGCGTCGTTCCAAGCCTTGGAGTTTGA 966 55.18 MHSFAAGWPGVATAKPLCYSCKSATPTLFCRHDTAFLCLRCDFQIHTLSGTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHHHDVVQPDLKSEDIFFSEMDSLIDFDYPTTGDGVVPDESNPGTESTTPPTDYSTRNFCGFELFSTRSKLHNISYPSQNLSHSVSSSSLDVGVVPDRNTASDASFPEGQMAEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSETNCEIDRIYAGAGVGFMVSEGQYGVVPSLGV 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25191166 25192232 - ClCG11G012300.1 Cla11g01201 285023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01201 321 SMART bboxneu5 54 101 IPR000315 GO:0008270
Cla11g01201 321 SMART bboxneu5 13 48 IPR000315 GO:0008270
Cla11g01201 321 Pfam CCT motif 246 288 IPR010402 GO:0005515
Cla11g01201 321 Pfam B-box zinc finger 56 99 IPR000315 GO:0008270
Cla11g01201 321 MobiDBLite consensus disorder prediction 154 176 - -
Cla11g01201 321 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Cla11g01201 321 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 318 IPR045281 GO:0009909
Cla11g01201 321 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 13 318 - -
Cla11g01201 321 ProSiteProfiles CCT domain profile. 246 288 IPR010402 GO:0005515
Cla11g01201 321 CDD Bbox1_BBX-like 58 101 - -
Cla11g01201 321 ProSiteProfiles Zinc finger B-box type profile. 13 58 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01299 Cla11g01201 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01382 Cla-Chr8:26678492 Cla11g01201 Cla-Chr11:25191166 6.77E-79 dispersed
Cla11g01201 Cla-Chr11:25191166 Cla01g01962 Cla-Chr1:34257220 1.64E-07 dispersed
Cla11g01201 Cla-Chr11:25191166 Cla06g01299 Cla-Chr6:26345424 3.13E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62050 PF00643 zf-B_box 1.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01201 - - csv:101217538 553.903