Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01229 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCGTGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTTACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATTATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCAACGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGTAATTCTTAACCTTTCAGAGGGTGTTTGGGGGAAGAATGTGAGTGGAGCGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGACGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAATATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTGTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1644 48.6 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLVLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIQRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQVILNLSEGVWGKNVSGAGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVLFVDSIPIAPSGKILRKVLKAQLEAGAF 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25623628 25631657 - ClCG11G012560.1 Cla11g01229 285051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01229 547 Pfam AMP-binding enzyme 35 448 IPR000873 -
Cla11g01229 547 Gene3D - 4 442 IPR042099 -
Cla11g01229 547 CDD 4CL 22 538 - -
Cla11g01229 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 543 - -
Cla11g01229 547 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 543 - -
Cla11g01229 547 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cla11g01229 547 Gene3D - 443 545 IPR045851 -
Cla11g01229 547 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Cla11g01229 547 SUPERFAMILY Acetyl-CoA synthetase-like 12 544 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01321 Cla11g01229 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00323 Cla-Chr9:3124225 Cla11g01229 Cla-Chr11:25623628 2.93E-08 dispersed
Cla10g01217 Cla-Chr10:26812380 Cla11g01229 Cla-Chr11:25623628 0 dispersed
Cla10g01908 Cla-Chr10:34963679 Cla11g01229 Cla-Chr11:25623628 2.14E-112 dispersed
Cla11g01229 Cla-Chr11:25623628 Cla11g01330 Cla-Chr11:26773143 1.14E-110 dispersed
Cla08g01484 Cla-Chr8:27710634 Cla11g01229 Cla-Chr11:25623628 3.91E-15 transposed
Cla11g01229 Cla-Chr11:25623628 Cla06g01321 Cla-Chr6:26576714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01229 K01904 - csv:101210868 927.161