Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01236 ATGGGTTTTATTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTCGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCGTGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTATTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGCATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCCGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATGGTTCTTCACGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAGAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1113 41.51 MGFIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHRAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAMVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25829143 25834512 - ClCG11G012620.2 Cla11g01236 285058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01236 370 PANTHER WAT1-RELATED PROTEIN 10 346 IPR030184 GO:0016021|GO:0022857
Cla11g01236 370 PANTHER WAT1-RELATED PROTEIN 10 346 - -
Cla11g01236 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cla11g01236 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Cla11g01236 370 Pfam EamA-like transporter family 12 137 IPR000620 GO:0016020|GO:0016021
Cla11g01236 370 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01236 - - - csv:101213601 642.499
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla06g01441 Cla11g01236 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00401 Cla-Chr1:4418395 Cla11g01236 Cla-Chr11:25829143 2.00E-27 dispersed
Cla10g00247 Cla-Chr10:2983799 Cla11g01236 Cla-Chr11:25829143 8.19E-23 dispersed
Cla11g01236 Cla-Chr11:25829143 Cla11g01284 Cla-Chr11:26371717 7.52E-71 dispersed
Cla08g00712 Cla-Chr8:19390302 Cla11g01236 Cla-Chr11:25829143 5.46E-77 transposed
Cla11g01236 Cla-Chr11:25829143 Cla06g01276 Cla-Chr6:26041062 5.20E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g750 . . . . . . . . . Cmo11g00429 . Cma12g00827 . Car12g00739 Sed08g0542 Cpe04g01274 . Bhi02g00827 Tan09g1621 Cmetu02g1685 . Hepe09g0531 . . Cla11g01236 Cam11g1297 Cec11g1317 Cco11g1312 Clacu11g1455 Cmu11g1277 Cre11g1698 . Cone16ag0385 . . . Csa02g00579 . Cme02g01012 . . . . . . . . Sed11g0509 . Cmo12g00832 . Cma11g00430 . . . Cpe07g00686 Bhi06g01320 Tan08g0778 Cmetu05g0105 . Hepe08g2173 . . Cla06g01441 Cam06g1595 Cec06g1656 Cco06g1649 Clacu06g1558 Cmu06g1512 Cre06g2320 Lsi11g00715 Csa01g01932 Chy02g02167 Cme05g01459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g01051 . 1 755 Nodulin-like Gene Family AT4G19180 61.2 3.0e-250 861.7
Cla11g01561 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.4e-99 359.0
Cla09g01836 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 1.3e-113 406.8
Cla09g01831 . 1 278 Nodulin-like Gene Family AT3G28050 56.1 1.1e-83 307.4
Cla09g01836 . 10 333 Nodulin-like Gene Family AT5G40230 54.0 8.4e-92 334.3
Cla09g01831 . 2 240 Nodulin-like Gene Family AT5G40230 55.6 1.6e-71 266.9
Cla09g01836 . 3 333 Nodulin-like Gene Family AT5G40240 52.3 2.7e-90 329.3
Cla09g01831 . 2 240 Nodulin-like Gene Family AT5G40240 52.3 4.2e-67 252.3
Cla08g01451 CCT,ECH 107 373 Nodulin-like Gene Family AT3G53210 57.3 2.0e-84 309.3
Cla04g00834 . 117 378 Nodulin-like Gene Family AT2G37450 59.8 1.9e-82 302.8
Cla07g00296 . 111 347 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cla08g00578 . 117 357 Nodulin-like Gene Family AT2G37450 50.4 1.3e-65 246.9
Cla07g00295 . 117 379 Nodulin-like Gene Family AT2G37450 50.2 5.8e-63 238.0
Cla04g00834 . 51 356 Nodulin-like Gene Family AT2G37460 63.6 2.6e-112 402.5
Cla08g00578 . 23 350 Nodulin-like Gene Family AT2G37460 50.5 1.4e-94 343.6
Cla04g00594 CCT 13 362 Nodulin-like Gene Family AT2G37460 51.0 3.5e-93 339.0
Cla09g01961 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 1.0e-92 337.4
Cla07g00296 . 11 347 Nodulin-like Gene Family AT2G37460 53.1 1.2e-90 330.5
Cla07g00295 . 11 379 Nodulin-like Gene Family AT2G37460 50.4 4.7e-90 328.6
Cla10g01563 CCT 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.4e-88 322.4
Cla09g01959 . 10 342 Nodulin-like Gene Family AT2G37460 50.4 4.0e-81 298.9
Cla08g01451 CCT,ECH 95 486 Nodulin-like Gene Family AT1G75500 72.5 4.0e-161 564.7
Cla06g01441 CCT 7 333 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Cla05g01903 CCT,ECH 1 393 Nodulin-like Gene Family AT1G75500 56.5 3.7e-106 382.1
Cla05g02523 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 1.1e-94 344.0
Cla09g01961 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 1.7e-108 389.8
Cla07g00296 . 8 374 Nodulin-like Gene Family AT2G39510 55.0 1.6e-106 383.3
Cla07g00295 . 12 388 Nodulin-like Gene Family AT2G39510 53.7 2.5e-104 375.9
Cla04g00834 . 52 363 Nodulin-like Gene Family AT2G39510 56.9 2.2e-100 362.8
Cla04g00594 CCT 16 339 Nodulin-like Gene Family AT2G39510 52.0 5.9e-93 338.2
Cla11g01531 . 18 373 Nodulin-like Gene Family AT2G39510 51.3 1.3e-92 337.0
Cla09g01959 . 13 343 Nodulin-like Gene Family AT2G39510 53.2 6.5e-92 334.7
Cla10g01563 CCT 16 340 Nodulin-like Gene Family AT2G39510 52.1 7.2e-91 331.3
Cla09g01831 . 2 240 Nodulin-like Gene Family AT4G15540 51.0 1.9e-66 250.0
Cla08g00578 . 22 277 Nodulin-like Gene Family AT4G08290 63.5 1.6e-87 319.7
Cla11g01531 . 12 393 Nodulin-like Gene Family AT4G08300 60.1 1.1e-118 423.7
Cla08g00578 . 27 376 Nodulin-like Gene Family AT4G08300 50.7 9.0e-94 340.9
Cla02g00077 CCT 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Cla11g01236 CCT 1 368 Nodulin-like Gene Family AT4G30420 53.8 3.4e-104 375.6
Cla11g01284 . 6 406 Nodulin-like Gene Family AT5G07050 63.7 1.1e-140 496.9
Cla10g01563 CCT 10 342 Nodulin-like Gene Family AT5G07050 68.0 1.0e-127 453.8
Cla04g00594 CCT 10 339 Nodulin-like Gene Family AT5G07050 64.3 2.2e-122 436.0
Cla09g01961 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 7.4e-86 314.7
Cla04g00594 CCT 13 357 Nodulin-like Gene Family AT3G56620 58.8 9.4e-107 384.0
Cla11g01284 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 1.9e-99 359.8
Cla05g02523 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 7.9e-106 380.9
Cla02g01456 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.1e-110 397.1
Cla01g01070 . 3 369 Nodulin-like Gene Family AT1G09380 55.4 3.3e-104 375.6
Cla04g00594 CCT 13 352 Nodulin-like Gene Family AT2G40900 60.6 3.6e-109 392.1
Cla10g01563 CCT 12 363 Nodulin-like Gene Family AT2G40900 53.4 1.1e-105 380.6
Cla11g01284 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 1.4e-100 363.6
Cla06g01441 CCT 1 351 Nodulin-like Gene Family AT3G18200 68.5 3.4e-128 455.3
Cla08g01451 CCT,ECH 107 451 Nodulin-like Gene Family AT3G18200 57.7 8.6e-108 387.5
Cla11g01531 . 12 393 Nodulin-like Gene Family AT1G44800 58.2 9.8e-117 417.2
Cla08g00578 . 27 369 Nodulin-like Gene Family AT1G44800 51.6 7.3e-96 347.8
Cla04g00594 CCT 12 339 Nodulin-like Gene Family AT1G44800 50.3 1.2e-87 320.5
Cla11g01561 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.3e-102 369.0
Cla11g01531 . 12 351 Nodulin-like Gene Family AT1G21890 58.6 3.2e-109 392.1
Cla08g00578 . 26 327 Nodulin-like Gene Family AT1G21890 50.8 9.0e-88 320.9
Cla10g01563 CCT 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.9e-85 313.2
Cla07g01172 . 1 585 Nodulin-like Gene Family AT1G80530 57.2 3.5e-182 635.2
Cla07g01067 . 4 417 Nodulin-like Gene Family AT4G19450 65.7 1.9e-145 512.7
Cla06g00057 . 91 489 Nodulin-like Gene Family AT4G19450 57.7 3.6e-128 455.3
Cla06g01616 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 9.9e-179 623.6
Cla06g01618 CCT 64 578 Nodulin-like Gene Family AT1G74780 57.4 9.3e-169 590.5
Cla06g01617 . 6 459 Nodulin-like Gene Family AT1G74780 56.9 3.9e-143 505.4
Cla02g01155 CCT 9 540 Nodulin-like Gene Family AT4G34950 70.6 2.9e-221 765.0
Cla02g00435 CCT 1 469 Nodulin-like Gene Family AT4G34950 64.4 4.9e-184 641.3
Cla11g00909 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 9.0e-234 806.6
Cla02g01155 CCT 1 386 Nodulin-like Gene Family AT2G16660 70.3 7.6e-152 533.9
Cla02g00435 CCT 1 323 Nodulin-like Gene Family AT2G16660 65.6 4.1e-121 431.8
Cla08g00796 . 28 604 Nodulin-like Gene Family AT2G39210 62.9 8.5e-211 730.3
Cla10g01901 . 15 555 Nodulin-like Gene Family AT2G39210 57.8 7.0e-181 630.9
Cla04g00930 . 18 567 Nodulin-like Gene Family AT2G39210 55.8 2.8e-177 619.0
Cla03g00241 . 16 557 Nodulin-like Gene Family AT2G39210 51.0 6.2e-153 538.1
Cla04g00250 . 12 490 Nodulin-like Gene Family AT2G39210 52.4 2.1e-140 496.5
Cla05g02172 . 12 339 Nodulin-like Gene Family AT2G39210 67.8 2.0e-127 453.4
Cla04g00251 . 12 154 Nodulin-like Gene Family AT2G39210 62.2 1.7e-49 194.5
Cla07g01067 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.8e-147 519.2
Cla06g00057 . 97 636 Nodulin-like Gene Family AT3G01630 50.4 3.9e-141 498.8
Cla11g00909 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.5e-167 584.3
Cla06g01616 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 1.2e-165 580.1
Cla06g01618 CCT 58 571 Nodulin-like Gene Family AT1G18940 53.4 2.0e-155 546.2
Cla06g01617 . 3 459 Nodulin-like Gene Family AT1G18940 54.5 2.4e-137 486.1
Cla06g01616 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 2.0e-160 562.8
Cla06g01618 CCT 62 576 Nodulin-like Gene Family AT2G34350 53.7 6.6e-151 531.2
Cla06g01617 . 8 459 Nodulin-like Gene Family AT2G34350 54.0 1.3e-130 463.8
Cla08g00796 . 24 588 Nodulin-like Gene Family AT2G28120 58.9 4.1e-186 648.3
Cla03g00241 . 13 561 Nodulin-like Gene Family AT2G28120 57.2 2.4e-178 622.5
Cla10g01901 . 17 555 Nodulin-like Gene Family AT2G28120 58.1 6.1e-174 607.8
Cla03g00247 . 28 601 Nodulin-like Gene Family AT2G28120 54.1 1.1e-167 587.0
Cla04g00930 . 16 564 Nodulin-like Gene Family AT2G28120 55.1 1.4e-165 580.1
Cla03g00246 . 2 544 Nodulin-like Gene Family AT2G28120 51.0 6.6e-160 561.2
Cla04g00250 . 1 485 Nodulin-like Gene Family AT2G28120 52.9 5.4e-138 488.4
Cla05g02172 . 9 338 Nodulin-like Gene Family AT2G28120 61.6 3.4e-108 389.4
Cla04g00251 . 1 175 Nodulin-like Gene Family AT2G28120 52.6 1.2e-47 188.3
Cla07g01067 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 1.1e-165 580.5
Cla06g00057 . 97 643 Nodulin-like Gene Family AT1G31470 56.3 7.1e-162 567.8
Cla08g00707 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.3e-69 257.7
Cla09g00903 . 27 187 Nodulin-like Gene Family AT1G76800 76.4 6.5e-59 224.2
Cla09g01380 . 10 202 Nodulin-like Gene Family AT1G76800 62.2 1.1e-58 223.4
Cla09g01380 . 9 202 Nodulin-like Gene Family AT3G25190 68.5 1.2e-64 243.4
Cla08g00707 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.7e-61 230.7
Cla09g00903 . 34 188 Nodulin-like Gene Family AT3G25190 62.3 9.2e-46 180.6
Cla08g00707 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 6.1e-73 270.8
Cla09g01380 . 7 202 Nodulin-like Gene Family AT1G21140 61.2 7.5e-63 237.3
Cla09g00903 . 29 185 Nodulin-like Gene Family AT1G21140 74.5 4.7e-57 218.0
Cla08g00707 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 3.1e-72 268.5
Cla09g01380 . 7 199 Nodulin-like Gene Family AT3G43630 61.1 2.3e-59 225.7
Cla09g00903 . 29 193 Nodulin-like Gene Family AT3G43630 71.5 6.2e-57 217.6
Cla08g00707 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.7e-72 267.3
Cla09g01380 . 7 202 Nodulin-like Gene Family AT3G43660 61.9 8.2e-62 233.8
Cla09g00903 . 25 210 Nodulin-like Gene Family AT3G43660 64.5 1.0e-56 216.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002385 0 3 0 0 0 1 3 1 1 0 1 1 3 1 1 3 1 2 3 1 1 4 3 5 4 1 2 7 5 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01236 Cla_Chr11 FPKM 1.327836 1.93949 1.291188 1.119361 10.788355 11.867782 12.293145 0.980957 0.909052 0.697293