Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01236 ATGGGTTTTATTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTCGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCGTGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTATTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGCATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCCGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATGGTTCTTCACGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAGAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1113 41.51 MGFIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHRAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAMVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25829143 25834512 - ClCG11G012620.2 Cla11g01236 285058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01236 370 PANTHER WAT1-RELATED PROTEIN 10 346 IPR030184 GO:0016021|GO:0022857
Cla11g01236 370 PANTHER WAT1-RELATED PROTEIN 10 346 - -
Cla11g01236 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cla11g01236 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Cla11g01236 370 Pfam EamA-like transporter family 12 137 IPR000620 GO:0016020|GO:0016021
Cla11g01236 370 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla06g01441 Cla11g01236 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00401 Cla-Chr1:4418395 Cla11g01236 Cla-Chr11:25829143 2.00E-27 dispersed
Cla10g00247 Cla-Chr10:2983799 Cla11g01236 Cla-Chr11:25829143 8.19E-23 dispersed
Cla11g01236 Cla-Chr11:25829143 Cla11g01284 Cla-Chr11:26371717 7.52E-71 dispersed
Cla08g00712 Cla-Chr8:19390302 Cla11g01236 Cla-Chr11:25829143 5.46E-77 transposed
Cla11g01236 Cla-Chr11:25829143 Cla06g01276 Cla-Chr6:26041062 5.20E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01236 - - csv:101213601 642.499