Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g01284 | ATGGGAAAGCTTAGCTTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCTATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGTTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAACTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCGGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCTGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAATAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCATTAAACCCAACCAAATCCCAAGAGAATAATAATAATTGA | 1245 | 38.8 | MGKLSLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNETSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININNNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPLNPTKSQENNNN | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26371717 | 26375715 | - | ClCG11G013090.2 | Cla11g01284 | 285106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g01284 | 414 | PANTHER | WAT1-RELATED PROTEIN | 12 | 369 | - | - | |
| Cla11g01284 | 414 | PANTHER | WAT1-RELATED PROTEIN | 12 | 369 | IPR030184 | GO:0016021|GO:0022857 | |
| Cla11g01284 | 414 | Pfam | EamA-like transporter family | 190 | 329 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla11g01284 | 414 | Pfam | EamA-like transporter family | 18 | 159 | IPR000620 | GO:0016020|GO:0016021 | |
| Cla11g01284 | 414 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 52 | 162 | - | - | |
| Cla11g01284 | 414 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 334 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01456 | Cla-Chr2:29106269 | Cla11g01284 | Cla-Chr11:26371717 | 4.68E-86 | dispersed | |
| Cla04g00594 | Cla-Chr4:19981693 | Cla11g01284 | Cla-Chr11:26371717 | 1.96E-162 | dispersed | |
| Cla06g00654 | Cla-Chr6:8102760 | Cla11g01284 | Cla-Chr11:26371717 | 2.05E-85 | dispersed | |
| Cla06g01441 | Cla-Chr6:27986719 | Cla11g01284 | Cla-Chr11:26371717 | 1.93E-80 | dispersed | |
| Cla08g00578 | Cla-Chr8:17571583 | Cla11g01284 | Cla-Chr11:26371717 | 9.60E-118 | dispersed | |
| Cla08g01451 | Cla-Chr8:27419066 | Cla11g01284 | Cla-Chr11:26371717 | 8.48E-77 | dispersed | |
| Cla09g01838 | Cla-Chr9:36047419 | Cla11g01284 | Cla-Chr11:26371717 | 2.92E-57 | dispersed | |
| Cla10g01375 | Cla-Chr10:28801454 | Cla11g01284 | Cla-Chr11:26371717 | 1.17E-44 | dispersed | |
| Cla10g01562 | Cla-Chr10:31028582 | Cla11g01284 | Cla-Chr11:26371717 | 4.31E-19 | dispersed | |
| Cla11g01236 | Cla-Chr11:25829143 | Cla11g01284 | Cla-Chr11:26371717 | 7.52E-71 | dispersed | |
| Cla11g01284 | Cla-Chr11:26371717 | Cla11g01531 | Cla-Chr11:28947910 | 7.63E-113 | dispersed | |
| Cla11g01284 | Cla-Chr11:26371717 | Cla10g01563 | Cla-Chr10:31033344 | 1.36E-167 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g01284 | - | - | csv:101206648 | 640.188 |