Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01311 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGATGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGCGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.47 MELTDMQQSNKQQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAATGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSGGGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26626250 26627803 - ClCG11G013380.1 Cla11g01311 285133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01311 517 MobiDBLite consensus disorder prediction 89 108 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 146 161 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 1 42 - -
Cla11g01311 517 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
Cla11g01311 517 Pfam TCP family transcription factor 148 278 IPR017887 -
Cla11g01311 517 MobiDBLite consensus disorder prediction 126 145 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 126 161 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 489 517 - -
Cla11g01311 517 PANTHER TRANSCRIPTION FACTOR TCP8 47 517 - -
Cla11g01311 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 47 517 IPR005333 GO:0003700
Cla11g01311 517 MobiDBLite consensus disorder prediction 1 113 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 311 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01311 - - - csv:101222378 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00808 Cla-Chr1:9508678 Cla11g01311 Cla-Chr11:26626250 1.02E-36 dispersed
Cla02g01393 Cla-Chr2:28388336 Cla11g01311 Cla-Chr11:26626250 1.82E-39 dispersed
Cla04g01209 Cla-Chr4:27239889 Cla11g01311 Cla-Chr11:26626250 2.80E-43 dispersed
Cla06g01596 Cla-Chr6:29505943 Cla11g01311 Cla-Chr11:26626250 1.25E-45 dispersed
Cla11g01311 Cla-Chr11:26626250 Cla05g02451 Cla-Chr5:35942771 2.39E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00808 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.4e-68 255.0
Cla02g01393 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.9e-57 218.0
Cla06g00015 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cla05g02451 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.9e-41 165.2
Cla04g01209 CCT,ECH 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.7e-39 161.0
Cla11g01311 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cla11g01311 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cla05g01434 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.2e-60 229.2
Cla01g00808 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.0e-63 237.3
Cla02g01393 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.4e-61 230.7
Cla11g01311 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.5e-42 170.6
Cla07g01574 . 68 193 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62057 PF03634 TCP 6.50E-39 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01311 Cla_Chr11 FPKM 3.987364 3.790228 4.475131 4.953825 3.625303 3.720752 4.374954 11.305053 12.071687 14.105231