Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01311 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGATGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGCGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.47 MELTDMQQSNKQQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAATGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSGGGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26626250 26627803 - ClCG11G013380.1 Cla11g01311 285133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01311 517 MobiDBLite consensus disorder prediction 89 108 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 146 161 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 1 42 - -
Cla11g01311 517 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
Cla11g01311 517 Pfam TCP family transcription factor 148 278 IPR017887 -
Cla11g01311 517 MobiDBLite consensus disorder prediction 126 145 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 126 161 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 489 517 - -
Cla11g01311 517 PANTHER TRANSCRIPTION FACTOR TCP8 47 517 - -
Cla11g01311 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 47 517 IPR005333 GO:0003700
Cla11g01311 517 MobiDBLite consensus disorder prediction 1 113 - -
Cla11g01311 517 MobiDBLite consensus disorder prediction 311 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00808 Cla-Chr1:9508678 Cla11g01311 Cla-Chr11:26626250 1.02E-36 dispersed
Cla02g01393 Cla-Chr2:28388336 Cla11g01311 Cla-Chr11:26626250 1.82E-39 dispersed
Cla04g01209 Cla-Chr4:27239889 Cla11g01311 Cla-Chr11:26626250 2.80E-43 dispersed
Cla06g01596 Cla-Chr6:29505943 Cla11g01311 Cla-Chr11:26626250 1.25E-45 dispersed
Cla11g01311 Cla-Chr11:26626250 Cla05g02451 Cla-Chr5:35942771 2.39E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62057 PF03634 TCP 6.50E-39 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01311 - - csv:101222378 565.844