Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01331 ATGCAGAGAAAGATGAAGAGAGGTTTGGTGGTGGTGGTGGTGGTGGTTTGTTTATTGGGAAGTAGCTGGGTGGGAAAGGCAGAGGAAGAGAATTTGAAAGAGGGTTGCAGCAGTGATTTCGAGAAAGTGGTGAGTTGCTTCGAGTACGCGACGGGGAAGGCGGCGGGGCCGAGTAAGGAGTGCTGTGACTCAATTGAAGGTATAAAAGAAAGCAAGCCAAAATGCTTGTGTTTCTTCATACAGCAGACTCATAATGGAAATCAGCAGATTAAGAGCTTGGGCATTCAAGAGATTAAGCTTCTTCAGCTTCCTTCTGTTTGTCACTTGAAAAACTCTAGCGTTAGCTATTGCCCTAAGCTTCTGGGGCTACCCGCAAATTCACCCGACGCTGCTATTTTTAGCAATACAACAACACCAGCGACGCCGGCGTCCTCAACGACGACGAGGACAAGTCCCGACGGCAGTGGCGGAAGTAAGATAGTAGCCAATTCTCCGGCCGGACTGATGGCGGTGGCGATGGCGGTCGTGTTTTTCACAGCCTTCCTTTCGCCGATCACGCTTTCATTAACATATTGTGAATTCACCAAAATTAAGTATGATCTTGAAGGCTCGGGCCCACTTGCGCTCATTCACGCAACAAAACGGCGTTCGTACTCCCTTTTACCCGACGAGCATCGCCGTTTCCGACTGAAAAAAAGATCCACGCAGCTATTCCGAGTCCAAGAACAAGATCTCTCCGTCATCGTCTTCCTGATAGGTCGCAATATGTCTCAGGTTGATAGCAGGAATTCCTCTGCGGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGCCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAATTCTAAATCTGCTGCCAAGCCCATTCAAGCTCCTCAGGGTTACTCCTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCAAGGCCTGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCGAAACCTGGGTCACAGGGTTCCAAAAACGACAAAAGTTCTAAACAAAAGACGCCAGAGGGTAGCTGGAAATGTGAGAAATGTAACAACATAAATTATCCATTCCGAACCAAGTGCAACAGACAAAATTGTGGAGCAGACAAGCCAGCGGATTCAGAGAAATCCCCATCACCAGCACAGGATGAAAATGATCAGGACAGTGCCCCAAAGTTCAGAGGATGCATTGGATTAGATAGGATTTACTTTTGTTTTTGGGTTGGCCTGTTAACGTATGACACTTATTTGGTGGGGTCACGTCATCATTATGGTCAGTAA 1572 47.26 MQRKMKRGLVVVVVVVCLLGSSWVGKAEEENLKEGCSSDFEKVVSCFEYATGKAAGPSKECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNTTTPATPASSTTTRTSPDGSGGSKIVANSPAGLMAVAMAVVFFTAFLSPITLSLTYCEFTKIKYDLEGSGPLALIHATKRRSYSLLPDEHRRFRLKKRSTQLFRVQEQDLSVIVFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSPAQDENDQDSAPKFRGCIGLDRIYFCFWVGLLTYDTYLVGSRHHYGQ 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26781192 26789969 - ClCG11G013590.2 Cla11g01331 285153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01331 523 Gene3D - 33 114 IPR036312 -
Cla11g01331 523 MobiDBLite consensus disorder prediction 266 280 - -
Cla11g01331 523 SUPERFAMILY Ran binding protein zinc finger-like 432 470 IPR036443 -
Cla11g01331 523 PANTHER ZINC FINGER PROTEIN 379 477 - -
Cla11g01331 523 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 35 117 IPR036312 -
Cla11g01331 523 MobiDBLite consensus disorder prediction 465 486 - -
Cla11g01331 523 SMART aai_6 36 117 IPR016140 -
Cla11g01331 523 MobiDBLite consensus disorder prediction 419 441 - -
Cla11g01331 523 PANTHER OS08G0521400 PROTEIN 260 365 - -
Cla11g01331 523 Pfam Probable lipid transfer 28 117 IPR016140 -
Cla11g01331 523 SUPERFAMILY Ran binding protein zinc finger-like 387 424 IPR036443 -
Cla11g01331 523 CDD AAI_LTSS 45 109 - -
Cla11g01331 523 SUPERFAMILY Ran binding protein zinc finger-like 272 309 IPR036443 -
Cla11g01331 523 Pfam Zn-finger in Ran binding protein and others 438 468 IPR001876 -
Cla11g01331 523 Pfam Zn-finger in Ran binding protein and others 277 299 IPR001876 -
Cla11g01331 523 Pfam Zn-finger in Ran binding protein and others 393 422 IPR001876 -
Cla11g01331 523 Gene3D - 383 424 - -
Cla11g01331 523 Gene3D - 429 470 - -
Cla11g01331 523 Gene3D - 269 309 - -
Cla11g01331 523 PANTHER OS08G0521400 PROTEIN 379 477 - -
Cla11g01331 523 SMART zf_4 279 305 IPR001876 -
Cla11g01331 523 SMART zf_4 394 420 IPR001876 -
Cla11g01331 523 SMART zf_4 440 466 IPR001876 -
Cla11g01331 523 MobiDBLite consensus disorder prediction 134 158 - -
Cla11g01331 523 PANTHER ZINC FINGER PROTEIN 260 365 - -
Cla11g01331 523 MobiDBLite consensus disorder prediction 261 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01331 - - - csv:101214779 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02316 Cla-Chr2:38267561 Cla11g01331 Cla-Chr11:26781192 4.02E-11 dispersed
Cla09g00331 Cla-Chr9:3210185 Cla11g01331 Cla-Chr11:26781192 1.68E-14 dispersed
Cla10g01468 Cla-Chr10:29911132 Cla11g01331 Cla-Chr11:26781192 1.30E-07 dispersed
Cla11g01331 Cla-Chr11:26781192 Cla05g00530 Cla-Chr5:4896171 7.10E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01331 Cla_Chr11 FPKM 15.281987 17.109146 14.824485 14.429418 13.992482 13.26121 13.313971 16.862576 15.725904 15.094755