Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01338 ATGAGAACTCGAACAGGCTTATCTTACCCTCAACTTCAACCAAACACCTTCTCCTCCGACAACCGTCATCGGAAGAGAACACATCATGCCGCTGCCGACCGCCCCTTTTGCCGGAAAAGGAACAAGCTCTCTTCCGACATCAAAACACCCATCTCCGATTTGTTCGATTCCTTGCCGGATGACCTCGTCATTTCTATTCTCTCTAATCTCAGCTCTGCCGCTTCTTCCCCCTCCGATTTCATCAATATCTTGCTAACATGCAAAAGATTGAACAGTTTAGGACTTAATCCGATGGTATTATCAAGAGCTTCTCAGAAGACTTTCGCAATTAGGGCACGAAACTGGACGGAATCCGCTCACCGGTTTCTGAAACAGTGTTCCGATGCCGGGAATGTTGAGGCCTGTTATACACTTGGCATGATTCGTTTCTACTGTTTGCAAAATCGGGGTAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTTGTTCTCACGCGCCGGCTCTTTACTCCCTCGCCGTTATTCAATTCAACGGCAGCGGCGGATCAAAGAACGATAAGGACCTCCGTGCCGGAGTTGCGCTTTGCGCTCGTGCGGCGTTTCTCGGCCACATCGACGCCCTTAGAGAACTTGGTCATTGCCTTCAAGACGGTTACGGCGTTCGTCAGAACATAACGGAGGGTCGTCGGTTTCTTGTTCAGGCCAACGCGCGTGAACTCGCGGCCGTGCTGTCTTCGGAGGCGGCTTCTTCCGTTGTCGCATCGCGCTCGTGCCTCACGTGGAACCCTCACCCTTCTCACCACCGGCACGTTACGAGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGTGGCTCATCCGGCGAGTCAGTTTTTGGCTGAGTGGTTCGAGGCACGTGGGGGGTCGCCTGGGCATGGTCTGAGGCTGTGTTCGCACGTGGGGTGTGGACGTCCGGAGACCAGACGGCATGAGTTTCGTCGGTGTTCCGTTTGTGGTGCCGTTAACTACTGCTCTCGTGCATGTCAGGCGCTGGATTGGAAACTCCGCCACAAGATGGATTGTGTTCCGGTGGAACGTTGGCTTGATGATAACGGTGACGGTGGGGCCGATGTGGCCGATGATATCATGGACGAAAGTTAA 1155 53.94 MRTRTGLSYPQLQPNTFSSDNRHRKRTHHAAADRPFCRKRNKLSSDIKTPISDLFDSLPDDLVISILSNLSSAASSPSDFINILLTCKRLNSLGLNPMVLSRASQKTFAIRARNWTESAHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAASSVVASRSCLTWNPHPSHHRHVTSSGCPLLSDFGCNIPAPVAHPASQFLAEWFEARGGSPGHGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDCVPVERWLDDNGDGGADVADDIMDES 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26850430 26852140 + ClCG11G013670.1 Cla11g01338 285160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01338 384 SUPERFAMILY HCP-like 114 234 - -
Cla11g01338 384 Pfam MYND finger 320 359 IPR002893 -
Cla11g01338 384 PANTHER OSJNBA0044M19.1 PROTEIN 1 376 - -
Cla11g01338 384 SUPERFAMILY F-box domain 52 111 IPR036047 GO:0005515
Cla11g01338 384 Gene3D - 308 363 - -
Cla11g01338 384 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Cla11g01338 384 Gene3D Tetratricopeptide repeat domain 98 253 IPR011990 GO:0005515
Cla11g01338 384 MobiDBLite consensus disorder prediction 1 18 - -
Cla11g01338 384 MobiDBLite consensus disorder prediction 1 34 - -
Cla11g01338 384 PANTHER MYND DOMAIN-CONTAINING 1 376 IPR044508 -
Cla11g01338 384 SUPERFAMILY HIT/MYND zinc finger-like 313 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01338 - - - csv:101213808 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00353 Cla-Chr3:4108577 Cla11g01338 Cla-Chr11:26850430 7.01E-151 dispersed
Cla06g01741 Cla-Chr6:30962612 Cla11g01338 Cla-Chr11:26850430 1.64E-136 dispersed
Cla11g01338 Cla-Chr11:26850430 Cla08g01681 Cla-Chr8:29423260 1.32E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01338 Cla_Chr11 FPKM 10.098224 9.571984 11.535439 12.527497 7.956328 7.228898 9.163626 16.65321 16.834503 19.142414