Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01354 ATGAAATTGCTCTTTTATGAAGCCTCCTTGGTCGATTCCGTCTGCCCTTCTTCTCTTCTGGACGAAATTGGAAGCGATTCGGATGCTTGGAATTTAAATGGGAATACAAATAGACGATTTTCCTTGATGAACATAAAATTATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGGTATGAGCTGAAATATATTTTCTGTTTCTTCTCATGGTCACGAATGAGTATTGATGACATTGTAATTAGCTTCCTGGGAGGGAGGAGGAGGTTCTCTCCCCCTCTGCCCTTAGCCTATTATCTTTTGGTACATCTATATATTAACAAAATGAATAAGAAAAGAAAGAAAAAGAAGGTTGACGCGTTTGTTATGCATATTAGTGCTAAGAAGACCTCCTATCACCTGTTTCTTTGTTCAACTCACAGAAGAAAAGCAGTAATATGGATTTACAGTGTCAGATTTTGGTGGAAGTCTTCTTTGTTGGTGTGCTTGTCTGTGACTAGGGGTGCTGGGATCATGTGTGGAGTCATGTTTCCTTGTAAATACTACAAGCAGTCAAACTACTTTAGTATAGAGATATCTGTTTTACTGGAGGCATATTATATTTCCTTGTTGCATGGAGAAATGTTCAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAATACTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTCGAAGATATTGTTTCACAATCAATTGGATTTCAGAGTTTTGGAAGCAGCATGGTGAAAGTTCATGATTTTGATTTTGAAAGCAACTTAATCTCGATTAATCACATAATGGACTCAATCATGTCTAGAATCTTGGACACTTTGATCACTTGCATTTGGAATATGCTGATGGATTTTAGTTTGTTCATAACTGTGTATCTTATTCAGCAGATAGTGAACGAACTCAAGAACACTGTTTTCTTACTTGATCCACTTGAGAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCTATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTCAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACACCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTCTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTAAAGTTTTTGAACATCAGCTTTCAAAGCTTAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTTATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCGCACCTGTCGTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAATCACTTGATCTGAATTATTGGAGACTTGCATTGTCTGATTCTGAGTCTGTAAAATCAAAATCTGTGGACAATGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACACGGAGGAGTCAGCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAATAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCGAATTTACATGGACCTGCAACGGCCCTATATTTGAACCTTTCCTGCCTGGAAGATGCCAAACCTATCATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTTTATAACCTTTCAACCACGCCGTCCATCATTCCTGTTCTTCTTTCCGCTGGTATTGTCGGTGGACTTCAATCCTTTATTGCAGCTCCTAGCGACAGCATGTGGACAGAGACTTCTTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTAGGGATAGAAGAAATAACTTCAGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTATCATGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTTGCGATTACGGTAAATGGAACTTCAAGAGGGAAAGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAGCAGCGAGACGGAAATAGCGACACGGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAATGTCAAAGAAAAAGATGGGGAAAGCACTAAGCTTTTTTGCGAGGAGCAAACGATTTTCACTATACCAATGTTGA 3042 40.53 MKLLFYEASLVDSVCPSSLLDEIGSDSDAWNLNGNTNRRFSLMNIKLWMFPRLKKYFLLPVMPRYELKYIFCFFSWSRMSIDDIVISFLGGRRRFSPPLPLAYYLLVHLYINKMNKKRKKKKVDAFVMHISAKKTSYHLFLCSTHRRKAVIWIYSVRFWWKSSLLVCLSVTRGAGIMCGVMFPCKYYKQSNYFSIEISVLLEAYYISLLHGEMFKKLAAIYGQVMSIFPSLEAARPRSKTGIRALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQSFGSSMVKVHDFDFESNLISINHIMDSIMSRILDTLITCIWNMLMDFSLFITVYLIQQIVNELKNTVFLLDPLEKQIGDDIIALLLQERKFDDSNGYNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDTDSQGGSTPCSPTLRCSLEDNGLAANGKVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESVKSKSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYTEESADFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFIAAPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSMSKKKMGKALSFFARSKRFSLYQC 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27032664 27037284 + ClCG11G013820.2 Cla11g01354 285176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01354 1013 CDD RING-Ubox_PUB 530 572 IPR045210 -
Cla11g01354 1013 ProSiteProfiles U-box domain profile. 525 599 IPR003613 GO:0004842|GO:0016567
Cla11g01354 1013 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 204 310 - -
Cla11g01354 1013 SUPERFAMILY ARM repeat 686 958 IPR016024 -
Cla11g01354 1013 SMART arm_5 752 790 IPR000225 GO:0005515
Cla11g01354 1013 SMART arm_5 791 832 IPR000225 GO:0005515
Cla11g01354 1013 SMART arm_5 706 750 IPR000225 GO:0005515
Cla11g01354 1013 Pfam U-box domain 527 596 IPR003613 GO:0004842|GO:0016567
Cla11g01354 1013 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 362 975 - -
Cla11g01354 1013 Gene3D - 648 969 IPR011989 -
Cla11g01354 1013 PANTHER U BOX DOMAIN-CONTAINING 204 310 - -
Cla11g01354 1013 PANTHER U BOX DOMAIN-CONTAINING 362 975 - -
Cla11g01354 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 599 IPR013083 -
Cla11g01354 1013 SUPERFAMILY RING/U-box 520 601 - -
Cla11g01354 1013 SMART Ubox_2 529 592 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01687 Cla-Chr8:29483155 Cla11g01354 Cla-Chr11:27032664 0 dispersed
Cla11g01354 Cla-Chr11:27032664 Cla07g00605 Cla-Chr7:11031387 3.84E-39 dispersed
Cla11g01354 Cla-Chr11:27032664 Cla03g00152 Cla-Chr3:1576062 2.32E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01354 - - csv:101210079 1325.07