Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01355 ATGTCGTTCCTAACGAACATGCCATCGACAACCTCTGTTTTCTCAGCCTACACTTCCTTCGCCGCTTCATCAATGGTGGCTCGAACAATGATCTCCGAAACCCACTCAATCATCTCCCAAATCATTCCCCAAACACTCCGCGATCAAATTTCCTCCAAATTCAACGCCATTTTCGGTTCAATCTCCTCTCAAATGCTTCTCATTATCGAAGAAAACAACGGAATCGCCATTAATGAGCTTTACAGAGCATCCGAAACTTACCTCTCTACAAAAATCTCTCCATCGCTGAACCATCTCAAGGCTTCCAAGGCTCCAGGAGAAACCAATGTAACCTACAAAATCAACAAAGGCGATGTACTAATCGACGTATTCGAAGGAATCCAAATCGCCTGGGAATTGATTTCCACAGAAAAACAGAGCACTTTTTTCGATTTCGAAATCTCTACTCAAACATCCGAAACAATTGAAAAACGACATTACCAAATCAGCTTCAACAAGAAACACAAAGATTTGGTAATGAAAATTTACGTTCCGTTTATTCTGAACAGAGCAAAAGTCATAGAGGAAGAAAACAGAGTGGTGAAGCTTTATGCGTTAATGGGGGGATATGGGAATGGGGATTCGATTGTTTTGCAGAACAGTTGTAGTTTTGGGAATTTGGCTATGGATGAGAAGAAGAAGAGGGAATTGATGGAGGATTTGGATAGATTTGTGATGAGAAGGGAATTTTATAGGAGGATTGGGAAGGCTTGGAAAAGAGGGTATCTTCTTTATGGGCCGCCGGGAACAGGGAAATCGAGCTTGGTGGCGGCCATGGCGGATTATTTGAAGTTTAATATTTATGATTTGGAGCTTAGCAGTGTTCACTCAAACTCGGCGCTTAGAACGATGCTGTTGTCCACTGCTGATAGGTCCATTATTGTGATTGAGGATATTGACTGCAGCGCTGAGCTGAAGGACCGTACAAATGGCGGACGTGACGGCGGTGACAGCCAGTTGACTTTGTCTGGAGTGTTGAACGTCATAGATGGGCTATGGTCAAGTTGTGGAGATGCAAGAATAATAGTTTTCACAACAAACCATAAGGAAAGATTGGACCCCGCATTGTTAAGACCCGGGCGCATGGATATGCACATCCACATGACTTATTTGACTCCTGATGGATTTAAAATTCTAGCCTCTAACTATTTGCAAATCAATCACCATCAACGTTTCAAAGAAATTCAAGACCTTATAATGGAGGTGGATGTCACACCTGCAGAAATTGCAGGGGAGCTCATGAAAAGTGACGATGCTGACATGGCACTTGAATCTGTCGTTGAATTCGTCAACGAAAAGAAGAAGAAGAAGATGGAGAAAGAGTGTAATTCTGACGTGATCGAAAATATTGGTTGTCATAGCCCCCAAGACAATGAGGATCAAGAAGATCTAAAGGAGAGAAAGAAATATAAACGAAGGCGAAACAGATGGAGTCGACCATGA 1482 42.51 MSFLTNMPSTTSVFSAYTSFAASSMVARTMISETHSIISQIIPQTLRDQISSKFNAIFGSISSQMLLIIEENNGIAINELYRASETYLSTKISPSLNHLKASKAPGETNVTYKINKGDVLIDVFEGIQIAWELISTEKQSTFFDFEISTQTSETIEKRHYQISFNKKHKDLVMKIYVPFILNRAKVIEEENRVVKLYALMGGYGNGDSIVLQNSCSFGNLAMDEKKKRELMEDLDRFVMRREFYRRIGKAWKRGYLLYGPPGTGKSSLVAAMADYLKFNIYDLELSSVHSNSALRTMLLSTADRSIIVIEDIDCSAELKDRTNGGRDGGDSQLTLSGVLNVIDGLWSSCGDARIIVFTTNHKERLDPALLRPGRMDMHIHMTYLTPDGFKILASNYLQINHHQRFKEIQDLIMEVDVTPAEIAGELMKSDDADMALESVVEFVNEKKKKKMEKECNSDVIENIGCHSPQDNEDQEDLKERKKYKRRRNRWSRP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27038864 27041304 - ClCG11G013830.1 Cla11g01355 285177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01355 493 PANTHER BCS1 AAA-TYPE ATPASE 3 463 - -
Cla11g01355 493 Pfam ATPase family associated with various cellular activities (AAA) 256 382 IPR003959 GO:0005524|GO:0016887
Cla11g01355 493 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Cla11g01355 493 Gene3D - 208 379 IPR027417 -
Cla11g01355 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 430 IPR027417 -
Cla11g01355 493 Gene3D - 380 450 - -
Cla11g01355 493 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Cla11g01355 493 PANTHER - 3 463 - -
Cla11g01355 493 SMART AAA_5 251 385 IPR003593 -
Cla11g01355 493 MobiDBLite consensus disorder prediction 461 493 - -
Cla11g01355 493 CDD AAA 252 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01355 - - K08900 qsu:112018277 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01917 Cla-Chr5:31009706 Cla11g01355 Cla-Chr11:27038864 9.50E-144 dispersed
Cla07g00824 Cla-Chr7:22872087 Cla11g01355 Cla-Chr11:27038864 7.98E-151 dispersed
Cla11g01355 Cla-Chr11:27038864 Cla01g01411 Cla-Chr1:28571206 6.65E-93 dispersed
Cla11g01355 Cla-Chr11:27038864 Cla01g01936 Cla-Chr1:34036082 4.60E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01355 Cam11g1413 Cec11g1439 Cco11g1437 Clacu11g1570 Cmu11g1390 Cre11g1811 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01355 Cla_Chr11 FPKM 26.822113 26.38793 24.226999 23.640253 44.29377 40.486107 41.273075 30.059919 31.851978 29.450583