Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01357 ATGAAGCTGACTCCAAGGGAAGTGGAAAAACTAGGTCTGCATAATGCGGGATATTTAGCACAGAAGCGTCTTGCTCGTGGCTTGAGGCTGAATTACGCTGAAGCTGTAGCCCTTATTGCCTCACAGATTTTGGAGTTCGTTCGCGATGGCAATTGCAGCGTGGCAGAATTGATGGAATTAGGGCGAGAACTCTTAGGGAGGAGACAAGTTCTTCCAAGTGTTCCACATCTTTTGAATTATATTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATAACTGTTCATAAGCCCATTGAGTCAGAGGTTGGGAATCTTGAGCGAGCTTTGCAGGGTTCTTTTCTTCCAGTTCCTTCGCTAGACAAGTTCCCTTTGATGGAAGATAGTAAAGTGCCTGGTGAGATTATCTGTGATGATAAAAAGATTGCAATTAATGTTGGACGGAAAGCTGTAATACTCAGTGTAAAAAATATGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGACAAATCCTTCTTTAGTTTTTGATCGATCAAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCCACACGATTTGAGCCAGGGTGTCCAAAAGATGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACTGCATCGCCGATGGTCCAGTTGATAAATCCAAATTGAAAGAAGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATTTGGAAGAAAAAGATGCTAGGTCTAGACTATCTAATGTGCAAGCAAACACAAGCCTTATTTTAGAATCATATTGCAGAGAAGGTGTTACTGGAGGGGAGGATGAGATATTCACCACCAGAGTTCTTCGTGAGGAGTATGCCAACCACTATGGTCCCACAACTCGCGACAAAGTTCGTCTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTGTGTTTATGGGGATGAATGTATGTTTGGAGGTGGAAAGGTTATCAGAGATGGAATGGGCCAGGCGTGTGGGCATCCACCGGCTTCATCTCTTGATACCGTAATAACCAATGCAGTGATTATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCACTTGGAAAAGCCGGCAATCCTGATATCATGGACAGAGTTTGTCCTAATCTGATTATTGGGGCTAATACTGAGGTTATTTCTGGAGAAGGATTGCTTGTTACTTCAGGGGCAATAGATTGCCATGTCCACTACATATGCCCTCAAATGGTACATGAAGCAATATCGAGTGGCATCACGACGCTGGTGGGAGGTGGAACCGGGCCAGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGCGCTGATGAAGATGATCCTCCAATCAACTGATAACCTCCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACACCTCGAAGCCAGATGAGATACATGAAATTATAAGGGCCGGAGCTATGGGACTGAAGCTACATGAAGACTGGGGATGCACTCCTGCTGCAATTGACAGTTGTTTAGCTGTGGCTGAAAAATATGACATTCAGGCACTTTTCTGTCTTTTAAAATTTCTCTCTACCAGTTTGAAGCTTTTAAATACTGTTAATATTCACACTGACACCTTGAATGAATCTGGATTTGTTGAAGATACGATTGCAGCTTTTAAAGGAAGAACTATACACACATACCACACTGAAGGAGCTGGAGGCGGTCATGCACCGGATATCATCAAAGTGTGCAGTGTGAAAAATGTGCTTCCTTCATCAACTAATCCAACACGACCATTCACAACGAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCCCAATATTGAAGAAGATGTAGCTTTTGCTGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGAGCAATTAGTATGATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTAGCAGAACATGGCAAACTGCCCACAAGATGAAGTTGCAAAGGGAACCGCTTGATTCCACAAAGCCAGACGACGACAACCTTCGGATCAAGCGATATGTTTCCAAATATACCATCAATCCAGCCATAGCAAATGGGATTTCTGAATATGTTGGTTCAGTAGAGGTAGGGAAATGGGCTGATCTTGTTCTATGGAAACCGTCCTTTTTTGGGACAAAACCAGAAAAGGTGTTGAAAGGTGGTATAATTGCATGGGCAAACATGGGTGATCCAAACGCAAGCATTCCTACACCTGAACCGGCAGCATTTAACGCGGGAGTTAAGGACATGTATGGACTAAACAAGAGAGTTGTAGCAGTGAGCAACACTAGGAAACTTACTAAACTAGACATGAAATGGAATGATGCCCTTCCAAACATCCAAGTGGATCCTGATCACTATGACGTGAAAGTAGATGGCGATGTTCTTACTTGTCTCCCAGCCACTACTCTCCCACTTTCAAGGGATTACTTTCTTTTCTAG 2556 43.0 MKLTPREVEKLGLHNAGYLAQKRLARGLRLNYAEAVALIASQILEFVRDGNCSVAELMELGRELLGRRQVLPSVPHLLNYIQVEGTFPDGTKLITVHKPIESEVGNLERALQGSFLPVPSLDKFPLMEDSKVPGEIICDDKKIAINVGRKAVILSVKNMGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGCPKDVTLVAIGGNQVIRGGNCIADGPVDKSKLKEVMEAVHARGFGHLEEKDARSRLSNVQANTSLILESYCREGVTGGEDEIFTTRVLREEYANHYGPTTRDKVRLGDTDLYAEIEHDFCVYGDECMFGGGKVIRDGMGQACGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISLGKAGNPDIMDRVCPNLIIGANTEVISGEGLLVTSGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPALMKMILQSTDNLPLNFGFTGKGNTSKPDEIHEIIRAGAMGLKLHEDWGCTPAAIDSCLAVAEKYDIQALFCLLKFLSTSLKLLNTVNIHTDTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIKVCSVKNVLPSSTNPTRPFTTNTIDEHLDMLMVCHHLDPNIEEDVAFAESRIRKETIAAEDILHDMGAISMISSDSQAMGRIGEVISRTWQTAHKMKLQREPLDSTKPDDDNLRIKRYVSKYTINPAIANGISEYVGSVEVGKWADLVLWKPSFFGTKPEKVLKGGIIAWANMGDPNASIPTPEPAAFNAGVKDMYGLNKRVVAVSNTRKLTKLDMKWNDALPNIQVDPDHYDVKVDGDVLTCLPATTLPLSRDYFLF 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27054853 27064001 + ClCG11G013850.2 Cla11g01357 285179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01357 851 Hamap Urease subunit alpha [ureC]. 289 851 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Cla11g01357 851 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Cla11g01357 851 TIGRFAM urease_gam: urease, gamma subunit 1 102 IPR002026 GO:0016151|GO:0043419
Cla11g01357 851 PANTHER UREASE 1 851 - -
Cla11g01357 851 CDD Urease_beta 131 231 IPR002019 GO:0035550|GO:0043419
Cla11g01357 851 Pfam Urease alpha-subunit, N-terminal domain 291 409 IPR011612 -
Cla11g01357 851 SUPERFAMILY Metallo-dependent hydrolases 419 851 IPR032466 -
Cla11g01357 851 Gene3D Urease, subunit C, domain 1 293 780 IPR011059 GO:0016810
Cla11g01357 851 SUPERFAMILY Composite domain of metallo-dependent hydrolases 290 467 IPR011059 GO:0016810
Cla11g01357 851 ProSiteProfiles Rhodanese domain profile. 754 772 IPR001763 -
Cla11g01357 851 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Cla11g01357 851 Pfam Amidohydrolase family 416 761 IPR006680 GO:0016787
Cla11g01357 851 CDD Urease_alpha 290 850 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 SUPERFAMILY Urease, gamma-subunit 1 103 IPR036463 GO:0016151|GO:0043419
Cla11g01357 851 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Cla11g01357 851 PRINTS Urea amidohydrolase (urease) protein signature 735 748 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 PRINTS Urea amidohydrolase (urease) protein signature 709 724 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 PRINTS Urea amidohydrolase (urease) protein signature 603 620 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 PRINTS Urea amidohydrolase (urease) protein signature 642 658 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 ProSitePatterns Urease active site. 625 641 IPR017950 GO:0009039
Cla11g01357 851 Gene3D - 419 730 - -
Cla11g01357 851 Gene3D - 781 851 - -
Cla11g01357 851 SUPERFAMILY Urease, beta-subunit 132 257 IPR036461 -
Cla11g01357 851 Gene3D Urease, beta subunit 131 263 IPR036461 -
Cla11g01357 851 ProSiteProfiles Urease domain profile. 419 851 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 Pfam Urease subunit beta-alpha linker domain 231 257 IPR040881 -
Cla11g01357 851 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Cla11g01357 851 TIGRFAM urease_alph: urease, alpha subunit 292 779 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 PIRSF Urease 1 781 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cla11g01357 851 PIRSF Urease 778 851 IPR008221 GO:0006807|GO:0009039|GO:0016151
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01357 K01427 URE; urease [EC:3.5.1.5] - csv:101209590 1318.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01357 Cla-Chr11:27054853 Cla11g01358 Cla-Chr11:27071174 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01357 Cla_Chr11 FPKM 7.570791 7.346214 6.992326 4.341697 8.010876 8.001631 6.930903 5.079935 5.828247 6.994913