Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01359 ATGGCAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAACTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAAAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTGGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTTGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAGAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGCAGTCTCCTAATGCAACGTCGGACACTCTTGATGCTATGCCAACGGCAGGTGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCGTCTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATGATCTTGAAGCAGAAAATTTTGGGGACGATGATTATGCTCCCACAAGGAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACCACACCAATTTCTGAGTCCTTGGAGGGCATCAAAGTACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGACGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATTTTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACTCTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCTGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTCGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATTTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGCATGTTCCTTTCAGGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTGTTTGGCTAA 2286 44.31 MAAGRMGGYRDYDMKDRDSSFDVSGVTAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSGGIASHGLKQKVLLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKQSPNATSDTLDAMPTAGGRSKDLEYLQPSSLVEPSAGGLGSDEFSASGSPMMPSSALLRKPWQNDLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKVQRKSLTPEIGEIMRQGSEAGTRSSESTERGDRSRSSSANHYLGNDFEKDEGMDLGDDFRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQHVPFRYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGLFG 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27088155 27094275 - ClCG11G013870.2 Cla11g01359 285181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01359 761 CDD STKc_CDC2L1 404 706 IPR045267 GO:0004674|GO:0005524|GO:0006468
Cla11g01359 761 MobiDBLite consensus disorder prediction 737 761 - -
Cla11g01359 761 Gene3D Transferase(Phosphotransferase) domain 1 493 737 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 33 69 - -
Cla11g01359 761 SUPERFAMILY Protein kinase-like (PK-like) 402 712 IPR011009 -
Cla11g01359 761 Gene3D Phosphorylase Kinase; domain 1 395 492 - -
Cla11g01359 761 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 163 761 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 1 399 - -
Cla11g01359 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Cla11g01359 761 MobiDBLite consensus disorder prediction 110 124 - -
Cla11g01359 761 SMART serkin_6 410 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01359 761 PANTHER CELL DIVISION PROTEIN KINASE 163 761 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 70 86 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 95 109 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 136 163 - -
Cla11g01359 761 ProSiteProfiles Protein kinase domain profile. 410 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla11g01359 761 MobiDBLite consensus disorder prediction 282 297 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 9 23 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 259 273 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 348 377 - -
Cla11g01359 761 MobiDBLite consensus disorder prediction 166 195 - -
Cla11g01359 761 Pfam Protein kinase domain 410 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01359 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - csv:101209096 1331.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01436 Cla-Chr6:27929686 Cla11g01359 Cla-Chr11:27088155 3.35E-77 dispersed
Cla08g01693 Cla-Chr8:29530279 Cla11g01359 Cla-Chr11:27088155 0 dispersed
Cla11g01359 Cla-Chr11:27088155 Cla02g02341 Cla-Chr2:38493991 4.27E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80952 PF00069 Pkinase 1.70E-75 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01359 Cla_Chr11 FPKM 24.683821 29.062561 3.217507 3.333516 3.58667 3.00182 3.59129 1.348215 1.413154 1.342975