Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01380 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCCGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCACCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCCAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGATGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTTGGACCGGTCAAACGTTGATTTTGTGATGAGCTTGGATCGAGCATGGGCTGGACTTGGACCGACCTCTCGGCTTCAATTGATGAGGTTGAATATATGGATCATGCTGAACGATTTAGAGAGTGAAATTGTATTTGTCCCTTAA 981 44.44 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVRFRLDRSNVDFVMSLDRAWAGLGPTSRLQLMRLNIWIMLNDLESEIVFVP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27341263 27345257 + ClCG11G014100.2 Cla11g01380 285202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01380 326 PANTHER PROTEIN PHOSPHATASE 2C 10 279 IPR015655 GO:0004722|GO:0006470
Cla11g01380 326 SMART PP2C_SIG_2 42 278 IPR001932 -
Cla11g01380 326 Gene3D - 26 286 IPR036457 -
Cla11g01380 326 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cla11g01380 326 SUPERFAMILY PP2C-like 25 278 IPR036457 -
Cla11g01380 326 CDD PP2Cc 30 278 IPR001932 -
Cla11g01380 326 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cla11g01380 326 SMART PP2C_4 23 276 IPR001932 -
Cla11g01380 326 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00886 Cla-Chr10:20318599 Cla11g01380 Cla-Chr11:27341263 1.46E-160 dispersed
Cla11g01380 Cla-Chr11:27341263 Cla11g01750 Cla-Chr11:31111961 5.42E-114 dispersed
Cla11g01380 Cla-Chr11:27341263 Cla07g00237 Cla-Chr7:2622852 6.47E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01380 K17506 - csv:101213414 553.132