Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01381 ATGCCATATGCCTCTTCACCCCACATTTCAATGTGTATGTGCCAGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCGTTCCAAAGCCGAGTTTATCATGTGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTGAGCTATGGTGGGTTTGTTGGATATTGCTTGGCGGCGAGATATTGCGAGATGGTGGAGAGGGTGGTGATGTGTAGTGCAGGTGTTTGTATGGAAAAGAAAGACCTGAAAGAAGGTTTGTTCAGAATCTCAGACTTGGAGGAGGCAGCCAAGATTTTGGTGCCGCAAGATCCTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTAGTAAGTTGTGGGATGGAGTGCATTTTGGGGAAAGCGCTCAACTGGTAGTAATCAAGAACGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCATCACTTGAAGTCCTTCCTCGGCGTCCAACGGCGAAACCATAAATGA 558 47.85 MPYASSPHISMCMCQISSTLGTRSRPSQSGLTRSKAEFIMCVMAANSVRKLSLIGLSYGGFVGYCLAARYCEMVERVVMCSAGVCMEKKDLKEGLFRISDLEEAAKILVPQDPKKLKELVKFALFRPPPLALLPSCSKLWDGVHFGESAQLVVIKNAGHACDLEKPKEYYHHLKSFLGVQRRNHK 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27347943 27349311 + ClCG11G014110.1 Cla11g01381 285203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01381 185 Gene3D alpha/beta hydrolase 17 178 IPR029058 -
Cla11g01381 185 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 33 137 - -
Cla11g01381 185 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 144 177 - -
Cla11g01381 185 PANTHER SI:DKEY-122A22.2 144 177 - -
Cla11g01381 185 PANTHER SI:DKEY-122A22.2 33 137 - -
Cla11g01381 185 SUPERFAMILY alpha/beta-Hydrolases 36 177 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01381 - - - jre:108984815 173.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01109 Cla11g01381 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01414 Cla-Chr9:26494685 Cla11g01381 Cla-Chr11:27347943 3.60E-12 dispersed
Cla01g01829 Cla-Chr1:33184396 Cla11g01381 Cla-Chr11:27347943 3.54E-31 wgd
Cla11g01381 Cla-Chr11:27347943 Cla08g01109 Cla-Chr8:23866471 1.05E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g411 . . . . . . . . Cmo05g00523 . . . . . Sed04g0141 . . Bhi04g00761 Tan02g2392 Cmetu03g0357 . Hepe10g0498 . Lcy13g1562 Cla08g01109 Cam08g1562 Cec08g1136 Cco08g1262 Clacu08g1266 . Cre08g1046 Cone4ag1334 . . . Lsi04g02234 . . Cme03g01864 Blo17g00119 Blo18g00257 . Bda13g01402 . Bpe14g00453 . Bma02g00142 . . . . Cma05g00500 . . Cpe11g00437 . Bhi09g02434 . . . . Mch11g0665 . Cla11g01381 . Cec11g1465 Cco11g1461 Clacu11g1596 Cmu11g1415 Cre11g1835 Lsi08g00965 Csa02g02150 Chy03g01368 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0041469 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01381 Cla_Chr11 FPKM 11.236705 12.672407 11.148636 11.741508 31.652922 35.556263 33.709316 7.785683 7.73019 6.888307