Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g01382 ATGGCGAAAGAGAGAGAACTACTCGTTTACTCAGCTAGATTGGCAGAGCAAGCTGAGAGATACGAAGGTACGTACTGTTTATTTCTAGAATCTAATTTCTTAATCGGGGATTTATTTGCTAATTCACTCGATCGATTCAATGAACTTAGCGATTACTGTTCCTTTGATTGCTGGGGCATGTTGGCGCTTAACTCTAGAATTTCGATCTGGCTTATTACTGAGATGGTTGAGAAAATGGAGAAAGTTGCAAAGTTAAACGTGGAATTGACTGTGGAAGAGAGAAATCTGCTATCTGTTGGTTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTATCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGATTACAGGCATCGGGTTGAAGATGAGCTCTCTAAAATATGCAGTGACATATTGTCGATCATTGACCAACATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGACTATTGTCGGTATTTGGCTGAGTTTAAATCTGGTGACGAGCGTAAACAAGTTGCAGATCAATCATTAAAGTCTTATGAGGCAAGTTTATTTCCTGCTGCATCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCGCTGAACTTCTCTGTTTTCTACTATGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCCAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAGTGAAGAATCCTACAAGGACAGTACCCTTATTATGCAACTCCTTAGGGACAACCTGACCCTGTGGACTTCTGATCTTCCAGACGAAGGTGCTCCTCTCCCAGAAAGATTGATTTGTTCCTATTCCTATCAACTTTCCGAAAAGTAG 945 41.06 MAKERELLVYSARLAEQAERYEGTYCLFLESNFLIGDLFANSLDRFNELSDYCSFDCWGMLALNSRISIWLITEMVEKMEKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIDYRHRVEDELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKSYEASLFPAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPDEGAPLPERLICSYSYQLSEK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27349996 27353450 - ClCG11G014120.2 Cla11g01382 285204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g01382 314 PANTHER 14-3-3 PROTEIN 73 296 IPR000308 -
Cla11g01382 314 SUPERFAMILY 14-3-3 protein 69 291 IPR036815 -
Cla11g01382 314 Pfam 14-3-3 protein 73 289 IPR023410 -
Cla11g01382 314 PRINTS 14-3-3 protein zeta signature 88 117 IPR000308 -
Cla11g01382 314 PRINTS 14-3-3 protein zeta signature 168 190 IPR000308 -
Cla11g01382 314 PRINTS 14-3-3 protein zeta signature 262 291 IPR000308 -
Cla11g01382 314 PRINTS 14-3-3 protein zeta signature 137 161 IPR000308 -
Cla11g01382 314 PRINTS 14-3-3 protein zeta signature 235 261 IPR000308 -
Cla11g01382 314 ProSitePatterns 14-3-3 proteins signature 1. 94 104 IPR023409 -
Cla11g01382 314 Coils Coil 249 269 - -
Cla11g01382 314 ProSitePatterns 14-3-3 proteins signature 2. 271 290 IPR023409 -
Cla11g01382 314 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 73 296 - -
Cla11g01382 314 Gene3D - 1 298 IPR036815 -
Cla11g01382 314 SMART 1433_4 73 302 IPR023410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g01382 K06630 YWHAE; 14-3-3 protein epsilon - csv:101213169 421.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01110 Cla11g01382 CCT
Cla08g01110 Cla11g01382 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00262 Cla-Chr7:2904787 Cla11g01382 Cla-Chr11:27349996 5.24E-128 dispersed
Cla11g01382 Cla-Chr11:27349996 Cla11g01392 Cla-Chr11:27459767 1.06E-106 dispersed
Cla05g02397 Cla-Chr5:35521249 Cla11g01382 Cla-Chr11:27349996 5.69E-125 transposed
Cla08g01043 Cla-Chr8:23114095 Cla11g01382 Cla-Chr11:27349996 5.32E-81 transposed
Cla11g01382 Cla-Chr11:27349996 Cla08g01110 Cla-Chr8:23868916 4.89E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g412 . . . . . . . . Cmo05g00524 . Cma01g01607 . Car01g01226 . . . Cpe07g00087 Bhi04g00762 . . . Hepe10g0497 . Lcy13g1561 Cla08g01110 Cam08g1563 Cec08g1137 Cco08g1263 Clacu08g1267 . Cre08g1047 . . Cone8ag0206 Cone12ag0218 Lsi04g02235 Csa03g04446 Chy04g00255 Cme03g01863 . . . . . . . . . Cmo01g01654 . Cma12g00101 Cma05g00501 Car05g00448 . . Cpe02g00372 . . . . . . . Cla11g01382 Cam11g1440 Cec11g1466 Cco11g1462 Clacu11g1597 Cmu11g1416 Cre11g1836 Lsi08g00896 Csa02g02151 Chy03g01367 Cme04g00285
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01123 CCT 4 242 14-3-3 family AT4G09000 90.8 6.9e-119 424.1
Cla11g01392 CCT 67 304 14-3-3 family AT4G09000 90.3 3.4e-118 421.8
Cla07g01545 . 6 241 14-3-3 family AT4G09000 86.9 1.3e-112 403.3
Cla11g01412 . 11 257 14-3-3 family AT4G09000 73.7 2.1e-99 359.4
Cla08g01178 . 36 279 14-3-3 family AT4G09000 73.4 3.0e-98 355.5
Cla07g00262 . 7 238 14-3-3 family AT4G09000 72.6 5.0e-93 338.2
Cla05g02397 . 4 262 14-3-3 family AT4G09000 66.3 4.8e-88 321.6
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT4G09000 71.9 1.5e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT4G09000 72.0 1.7e-80 296.6
Cla08g01043 . 4 259 14-3-3 family AT4G09000 52.3 2.1e-59 226.5
Cla11g01392 CCT 67 320 14-3-3 family AT1G78300 91.0 1.5e-124 442.6
Cla08g01123 CCT 6 252 14-3-3 family AT1G78300 92.3 5.8e-124 440.7
Cla07g01545 . 6 253 14-3-3 family AT1G78300 87.1 5.3e-117 417.5
Cla08g01178 . 44 280 14-3-3 family AT1G78300 75.5 1.7e-99 359.4
Cla11g01412 . 11 256 14-3-3 family AT1G78300 73.6 1.1e-98 356.7
Cla07g00262 . 7 246 14-3-3 family AT1G78300 71.5 2.8e-94 342.0
Cla05g02397 . 8 278 14-3-3 family AT1G78300 64.8 7.9e-89 323.9
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT1G78300 71.9 9.4e-82 300.4
Cla11g01382 CCT,ECH 1 297 14-3-3 family AT1G78300 57.2 1.2e-81 300.1
Cla08g01043 . 8 259 14-3-3 family AT1G78300 52.8 4.2e-58 221.9
Cla07g01545 . 6 259 14-3-3 family AT5G38480 90.6 7.4e-124 440.3
Cla08g01123 CCT 6 252 14-3-3 family AT5G38480 85.8 1.1e-114 409.8
Cla11g01392 CCT 68 314 14-3-3 family AT5G38480 85.4 2.4e-114 408.7
Cla08g01178 . 43 284 14-3-3 family AT5G38480 74.0 3.5e-97 351.7
Cla11g01412 . 10 262 14-3-3 family AT5G38480 70.8 7.7e-97 350.5
Cla07g00262 . 7 244 14-3-3 family AT5G38480 72.9 1.2e-92 336.7
Cla05g02397 . 8 278 14-3-3 family AT5G38480 67.4 1.8e-90 329.3
Cla08g01110 CCT,ECH 155 368 14-3-3 family AT5G38480 73.1 6.4e-83 304.3
Cla11g01382 CCT,ECH 74 301 14-3-3 family AT5G38480 70.0 2.0e-81 299.3
Cla08g01043 . 8 259 14-3-3 family AT5G38480 54.7 5.2e-61 231.5
Cla08g01123 CCT 3 242 14-3-3 family AT1G35160 90.0 1.4e-118 422.9
Cla11g01392 CCT 66 304 14-3-3 family AT1G35160 89.5 7.1e-118 420.6
Cla07g01545 . 6 240 14-3-3 family AT1G35160 86.8 5.8e-112 401.0
Cla11g01412 . 11 256 14-3-3 family AT1G35160 74.4 3.3e-99 358.6
Cla08g01178 . 34 279 14-3-3 family AT1G35160 73.2 4.8e-98 354.8
Cla07g00262 . 2 237 14-3-3 family AT1G35160 71.4 1.3e-92 336.7
Cla05g02397 . 8 262 14-3-3 family AT1G35160 66.9 7.6e-88 320.9
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT1G35160 71.5 1.4e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT1G35160 71.0 1.2e-80 297.0
Cla08g01043 . 8 259 14-3-3 family AT1G35160 52.4 5.7e-59 224.9
Cla07g01545 . 5 254 14-3-3 family AT5G16050 86.4 2.4e-117 418.7
Cla08g01123 CCT 3 253 14-3-3 family AT5G16050 79.3 1.2e-108 389.8
Cla11g01392 CCT 66 313 14-3-3 family AT5G16050 79.5 5.6e-106 380.9
Cla08g01178 . 43 281 14-3-3 family AT5G16050 71.1 2.1e-92 335.9
Cla11g01412 . 10 254 14-3-3 family AT5G16050 68.2 2.4e-88 322.4
Cla07g00262 . 1 238 14-3-3 family AT5G16050 66.3 2.7e-84 308.9
Cla05g02397 . 3 269 14-3-3 family AT5G16050 59.5 3.7e-81 298.5
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT5G16050 72.4 1.4e-80 296.6
Cla11g01382 CCT,ECH 88 297 14-3-3 family AT5G16050 71.0 1.7e-78 289.7
Cla08g01178 . 34 279 14-3-3 family AT5G10450 85.8 4.4e-114 407.9
Cla11g01412 . 9 256 14-3-3 family AT5G10450 82.3 1.9e-109 392.5
Cla08g01123 CCT 3 268 14-3-3 family AT5G10450 73.3 8.3e-105 377.1
Cla11g01392 CCT 63 304 14-3-3 family AT5G10450 79.4 1.4e-104 376.3
Cla07g01545 . 7 259 14-3-3 family AT5G10450 74.0 3.5e-103 371.7
Cla07g00262 . 1 238 14-3-3 family AT5G10450 67.6 5.4e-88 321.2
Cla05g02397 . 3 262 14-3-3 family AT5G10450 60.8 1.3e-81 300.1
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT5G10450 70.5 8.7e-78 287.3
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT5G10450 66.2 4.7e-76 281.6
Cla07g01545 . 4 261 14-3-3 family AT3G02520 91.5 1.8e-128 455.7
Cla08g01123 CCT 6 252 14-3-3 family AT3G02520 87.1 8.3e-118 420.2
Cla11g01392 CCT 67 320 14-3-3 family AT3G02520 84.8 5.4e-117 417.5
Cla08g01178 . 43 281 14-3-3 family AT3G02520 75.7 7.8e-100 360.5
Cla11g01412 . 10 254 14-3-3 family AT3G02520 73.5 2.1e-97 352.4
Cla07g00262 . 4 238 14-3-3 family AT3G02520 71.7 1.7e-91 332.8
Cla05g02397 . 8 279 14-3-3 family AT3G02520 63.2 1.6e-89 326.2
Cla11g01382 CCT,ECH 74 295 14-3-3 family AT3G02520 71.0 9.6e-82 300.4
Cla08g01110 CCT,ECH 164 366 14-3-3 family AT3G02520 72.4 9.6e-82 300.4
Cla08g01043 . 8 259 14-3-3 family AT3G02520 53.1 4.6e-60 228.4
Cla08g01178 . 42 279 14-3-3 family AT5G65430 88.7 1.3e-115 412.9
Cla11g01412 . 9 257 14-3-3 family AT5G65430 80.7 8.2e-110 393.7
Cla11g01392 CCT 63 304 14-3-3 family AT5G65430 80.2 4.6e-105 377.9
Cla08g01123 CCT 8 242 14-3-3 family AT5G65430 80.5 8.7e-104 373.6
Cla07g01545 . 7 241 14-3-3 family AT5G65430 79.2 1.1e-103 373.2
Cla07g00262 . 1 238 14-3-3 family AT5G65430 69.3 2.1e-89 325.9
Cla05g02397 . 8 262 14-3-3 family AT5G65430 63.6 1.0e-83 307.0
Cla08g01110 CCT,ECH 164 363 14-3-3 family AT5G65430 72.5 5.7e-79 291.2
Cla11g01382 CCT,ECH 74 292 14-3-3 family AT5G65430 68.0 2.4e-77 285.8
Cla07g00262 . 1 242 14-3-3 family AT2G42590 82.6 6.4e-113 404.1
Cla05g02397 . 6 295 14-3-3 family AT2G42590 66.7 4.8e-100 361.3
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT2G42590 78.4 1.3e-92 336.7
Cla11g01382 CCT,ECH 3 296 14-3-3 family AT2G42590 61.6 8.2e-92 334.0
Cla07g01545 . 8 248 14-3-3 family AT2G42590 73.0 1.4e-91 333.2
Cla08g01123 CCT 8 248 14-3-3 family AT2G42590 70.5 4.0e-91 331.6
Cla11g01392 CCT 70 307 14-3-3 family AT2G42590 71.4 2.0e-90 329.3
Cla08g01178 . 44 281 14-3-3 family AT2G42590 64.7 1.7e-81 299.7
Cla11g01412 . 11 254 14-3-3 family AT2G42590 63.9 1.9e-80 296.2
Cla08g01043 . 6 259 14-3-3 family AT2G42590 55.9 3.4e-66 248.8
Cla07g00262 . 6 242 14-3-3 family AT1G22300 78.5 1.9e-103 372.5
Cla05g02397 . 5 267 14-3-3 family AT1G22300 71.1 1.1e-98 356.7
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT1G22300 80.8 3.9e-93 338.2
Cla07g01545 . 4 246 14-3-3 family AT1G22300 70.4 3.7e-91 331.6
Cla11g01382 CCT,ECH 74 299 14-3-3 family AT1G22300 76.1 6.3e-91 330.9
Cla08g01123 CCT 8 246 14-3-3 family AT1G22300 70.3 1.0e-88 323.6
Cla11g01392 CCT 70 307 14-3-3 family AT1G22300 69.3 2.5e-87 318.9
Cla11g01412 . 11 263 14-3-3 family AT1G22300 63.1 1.5e-79 293.1
Cla08g01178 . 44 281 14-3-3 family AT1G22300 64.7 3.2e-79 292.0
Cla08g01043 . 5 259 14-3-3 family AT1G22300 54.9 5.4e-66 248.1
Cla07g00262 . 6 244 14-3-3 family AT1G34760 82.0 5.3e-106 380.9
Cla05g02397 . 5 270 14-3-3 family AT1G34760 73.7 3.0e-101 365.2
Cla08g01110 CCT,ECH 155 368 14-3-3 family AT1G34760 79.9 6.7e-93 337.4
Cla11g01382 CCT,ECH 74 296 14-3-3 family AT1G34760 77.1 1.4e-90 329.7
Cla07g01545 . 4 250 14-3-3 family AT1G34760 70.9 1.2e-89 326.6
Cla08g01123 CCT 8 245 14-3-3 family AT1G34760 72.3 5.9e-89 324.3
Cla11g01392 CCT 70 311 14-3-3 family AT1G34760 69.4 5.0e-88 321.2
Cla08g01178 . 44 280 14-3-3 family AT1G34760 64.1 6.1e-78 287.7
Cla11g01412 . 11 256 14-3-3 family AT1G34760 61.8 1.8e-77 286.2
Cla08g01043 . 5 259 14-3-3 family AT1G34760 59.6 2.8e-70 262.3
Cla05g02397 . 2 277 14-3-3 family AT1G26480 79.7 5.1e-115 411.0
Cla07g00262 . 3 242 14-3-3 family AT1G26480 80.8 4.6e-108 387.9
Cla08g01123 CCT 8 259 14-3-3 family AT1G26480 72.3 4.2e-93 338.2
Cla08g01110 CCT,ECH 155 367 14-3-3 family AT1G26480 78.9 2.7e-92 335.5
Cla11g01392 CCT 70 309 14-3-3 family AT1G26480 73.8 1.4e-91 333.2
Cla07g01545 . 5 256 14-3-3 family AT1G26480 72.0 2.3e-91 332.4
Cla11g01382 CCT,ECH 3 296 14-3-3 family AT1G26480 62.9 1.1e-90 330.1
Cla11g01412 . 11 254 14-3-3 family AT1G26480 64.8 1.8e-80 296.2
Cla08g01178 . 44 277 14-3-3 family AT1G26480 66.2 2.4e-80 295.8
Cla08g01043 . 2 259 14-3-3 family AT1G26480 62.4 8.8e-75 277.3
Cla07g00262 . 6 236 14-3-3 family AT1G78220 51.3 1.1e-63 240.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g01382 Cla_Chr11 FPKM 10.226043 11.968425 17.408037 16.535254 20.835785 21.19684 22.26893 2.997756 3.12804 3.326745